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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001453.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | CO-like | ||||||||
Protein Properties | Length: 402aa MW: 45217.6 Da PI: 5.5115 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.6 | 5.8e-09 | 19 | 62 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k++++fC ++ +lC++C ++ H+ H++v Itr_sc001453.1_g00002.1 19 ARACDSCLWKRARWFCVADDAFLCQSCDVSVHSAnllasrHQRV 62 578*****************************668888888876 PP | |||||||
2 | CCT | 67.8 | 3e-23 | 341 | 384 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Itr_sc001453.1_g00002.1 341 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRLKGRFVKRA 384 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.438 | 17 | 64 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.8E-11 | 17 | 64 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.9E-7 | 19 | 62 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.73E-9 | 20 | 64 | No hit | No description |
Pfam | PF06203 | 9.4E-18 | 341 | 383 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.043 | 341 | 383 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MMSFDNQRKT ANAISGKTAR ACDSCLWKRA RWFCVADDAF LCQSCDVSVH SANLLASRHQ 60 RVRLGTSSSS SSTAATLLSS PKCNQVVAAD DDDDESPPAW HRGFTRKPRT PRNAKRTKKQ 120 NSGAGGGVAA EESVNPLLPL VPEMGSDDDY NNNEIDPEQL FCQVPVLLDD DLNALLNDSG 180 GDDHMRGLEI PEFLSSDMEL AEFAADVETL LGDDDVEDKA TAAVKIEING DDCTEALNWS 240 FGEEQEVEQK VMMRMLSGLD EESSSMESGS CKEEVKKSRM LLSLNYEEVI SAWASQGCPW 300 TDGTRPHFDP NHCWPDFMGG DHYNHHPYGT AMMMRRSDEG REARVSRYRE KRRTRLFSKK 360 IRYEVRKLNA EKRPRLKGRF VKRASLFQPP PPFPNYLLNR HL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 351 | 367 | RRTRLFSKKIRYEVRKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019168512.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16 | ||||
Swissprot | Q8RWD0 | 4e-81 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A2G3A384 | 1e-121 | A0A2G3A384_CAPAN; Uncharacterized protein | ||||
STRING | XP_009798338.1 | 1e-118 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 2e-76 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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