 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc001449.1_g00005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
LBD |
| Protein Properties |
Length: 138aa MW: 15269.4 Da PI: 7.8119 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc001449.1_g00005.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 142.2 | 1.6e-44 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+CaaCk+lrr+C++dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe+ r da++s+vyeA+ar+rdPvyG+v+ i++lqqq
Itr_sc001449.1_g00005.1 14 PCAACKLLRRRCSQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQWRGDAVNSMVYEANARVRDPVYGCVAAISSLQQQ 99
7************************************************************************************* PP
DUF260 87 leqlkaelallkee 100
+e l+++la +++e
Itr_sc001449.1_g00005.1 100 IELLQTQLAIAQAE 113
*********99986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 138 aa
Download sequence Send
to blast |
MKECAGRKQG GASPCAACKL LRRRCSQDCV FAPYFPADEP HKFASVHKVF GASNVNKMLQ 60
ELPEQWRGDA VNSMVYEANA RVRDPVYGCV AAISSLQQQI ELLQTQLAIA QAEMVHMRMR 120
HFSADNTAMD SSGNAYDV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975523 | 5e-49 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
