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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001446.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WRKY | ||||||||
Protein Properties | Length: 334aa MW: 36844.8 Da PI: 6.8411 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.2 | 3.4e-33 | 181 | 238 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++Cpvkk+vers +dp+vv++tYeg+H+h+ Itr_sc001446.1_g00003.1 181 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCPVKKRVERSYQDPSVVITTYEGQHDHH 238 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.8E-35 | 165 | 240 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-29 | 172 | 240 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.363 | 175 | 240 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-38 | 180 | 239 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-26 | 181 | 238 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MAEELRDFYY HQPFQDDRHG GGFLYSAAQA SSMADSSLIH HHHNLDPTSP YLSFTDYLQG 60 SSDFEASAGV GFSSSPPSLD RERRPVNVTT TDAAAGGGST ETPVAMTPNS SISSSSTEAG 120 GGDNEDSKHK REKLAKETEG EDDGEDNNSS KKENKGKKKG EKKQRQPRFA FMTKSEVDHL 180 EDGYRWRKYG QKAVKNSPYP RSYYRCTSQK CPVKKRVERS YQDPSVVITT YEGQHDHHIP 240 TNLRGSLAGM LPPSMLATSS LLGGPPPQGG ATLPPELLMA QINPLAHHFY GGGHNAASMM 300 FQPHQNNLTQ MQQLHPDFGL LQDMVPSMIF KQEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-27 | 170 | 240 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-27 | 170 | 240 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019190147.1 | 0.0 | PREDICTED: probable WRKY transcription factor 28 | ||||
TrEMBL | A0A1J6JA38 | 2e-96 | A0A1J6JA38_NICAT; Putative wrky transcription factor 71 | ||||
STRING | XP_009760855.1 | 5e-97 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 3e-52 | WRKY DNA-binding protein 71 |