 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Itr_sc001439.1_g00003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
LSD |
| Protein Properties |
Length: 148aa MW: 15409.2 Da PI: 8.0709 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc001439.1_g00003.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 42.6 | 9.7e-14 | 31 | 55 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL+YP GA+sV+Ca+C +V
Itr_sc001439.1_g00003.1 31 CSGCRNLLMYPVGATSVCCAVCSAV 55
**********************998 PP
|
| 2 | zf-LSD1 | 46.5 | 6e-15 | 70 | 94 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL+Y rGA+sV+C++C+t+
Itr_sc001439.1_g00003.1 70 CGGCHTLLMYIRGATSVQCSCCHTI 94
***********************97 PP
|
| 3 | zf-LSD1 | 39.8 | 7.4e-13 | 108 | 131 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
Cg+Cr lL+Y +GA+sV+Ca+C++
Itr_sc001439.1_g00003.1 108 CGNCRMLLMYQYGARSVKCAVCNF 131
**********************96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009814 | Biological Process | defense response, incompatible interaction |
| GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response |
| GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response |
| GO:0045595 | Biological Process | regulation of cell differentiation |
| GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
| Sequence ? help Back to Top |
| Protein Sequence Length: 148 aa
Download sequence Send
to blast |
MPVPLAPYPT APAPSPLLSP ATNGAQSQLV CSGCRNLLMY PVGATSVCCA VCSAVTAVPP 60
PGTEMAQLIC GGCHTLLMYI RGATSVQCSC CHTINLALEA NQVAHVNCGN CRMLLMYQYG 120
ARSVKCAVCN FLTAVGVSPN MNEQKLKS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
