PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001380.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 336aa    MW: 37745.8 Da    PI: 8.3927
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001380.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.61.1e-27622451128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk............................. 49 
                              lp+G++F+P+d+e++ e+L++kv+ ++      ++++ + ++   +i++++P++Lp                              
  Itr_sc001380.1_g00013.1  62 LPAGVKFDPSDQEIL-EHLEAKVSLDShklhplIDEFIHtLEGEdGICYTHPEKLPDtgliqpfhnvkvtfnvlsflwapdtvlvl 146
                              799***********9.99****999985554432222222444435**********5589************************** PP

                      NAM  50 .............kvkaeekewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrap 114
                                            v+++    +fF++ +k+y+tg+rk+r+++      + +W++tgk+++v + kg ++g kk+Lv+y   g+++
  Itr_sc001380.1_g00013.1 147 spkdwpilsnqdvGVTKDGLVRHFFHRPSKAYTTGTRKRRKVHtdvdgnETRWHKTGKTRPVAA-KGMVKGYKKILVLYtnYGKQR 231
                              **99999887754333334466******************744445555888***********9.999***********6657999 PP

                      NAM 115 kgektdWvmheyrl 128
                              k+ekt+Wvmh+y+l
  Itr_sc001380.1_g00013.1 232 KPEKTNWVMHQYHL 245
                              999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-857119IPR003441NAC domain
PROSITE profilePS5100527.5962264IPR003441NAC domain
PfamPF023652.3E-1463245IPR003441NAC domain
SuperFamilySSF1019411.28E-23162264IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTCSSDSGED RPARLFAQNS GGKNNSVTIN EITRHSGMRA CPSCGHPIKC EQKAGIHNLP  60
GLPAGVKFDP SDQEILEHLE AKVSLDSHKL HPLIDEFIHT LEGEDGICYT HPEKLPDTGL  120
IQPFHNVKVT FNVLSFLWAP DTVLVLSPKD WPILSNQDVG VTKDGLVRHF FHRPSKAYTT  180
GTRKRRKVHT DVDGNETRWH KTGKTRPVAA KGMVKGYKKI LVLYTNYGKQ RKPEKTNWVM  240
HQYHLGDDED EKEGELVVSK VFFQTQPRQC GSLLRDSPPL DLPQAGRKAG SHLRESAATM  300
VESFNPTLIS FDQFDHNRPA SRLLPSFNMH DTSFIP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193007.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-105NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2Z5HVI90.0A0A2Z5HVI9_IPOBA; NAC8 protein
STRINGXP_009587632.11e-131(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-101NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]