PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc001375.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

YABBY

Protein Properties

Length: 216aa MW: 23990.1 Da PI: 8.3111

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001375.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	95.1	1.7e-29	10	86	4	80
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveee 80 ++se+vCyv+CnfC+tilavsvP +s+f++vtvrCGhC++llsvn+ q l+ ++ +e+ +++ +e+++ ++ Itr_sc001375.1_g00007.1 10 STTSERVCYVHCNFCTTILAVSVPCSSMFTIVTVRCGHCANLLSVNMGSLLQPLPLQDIQNEQKQQQSNNEDGSGSS 86 5789***************************************************9996444444444444444333 PP
2	YABBY	76.8	7.2e-24	154	190	134	170
YABBY 134 keeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +eeiqrikasnPdishreafs+aaknWahfP+ihfgl Itr_sc001375.1_g00007.1 154 REEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 190 7**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.7E-31	12	107	IPR006780	YABBY protein
Pfam	PF04690	7.6E-22	154	190	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDISSSSSSS TTSERVCYVH CNFCTTILAV SVPCSSMFTI VTVRCGHCAN LLSVNMGSLL 60 QPLPLQDIQN EQKQQQSNNE DGSGSSSSSK CNKFAPFDSP EHEQQPRLAP IRLSNKSRPF 120 HFLERWREGI SVRVPLLHHI ALLYRPASII GINREEIQRI KASNPDISHR EAFSTAAKNW 180 AHFPHIHFGL NLDNNKQAKI DHAVGGEGPQ KSLGLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ633046	2e-92	AJ633046.1 Ipomoea nil partial mRNA for putative CRC transcription factor 2 (crc2 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199472.1	1e-105	PREDICTED: putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	1e-52	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1J6KYN5	2e-81	A0A1J6KYN5_NICAT; Putative axial regulator yabby 2
STRING	XP_009792033.1	3e-80	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-48	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]