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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Itr_sc001342.1_g00004.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family |
MYB_related |
Protein Properties |
Length: 336aa MW: 37169.3 Da PI: 9.6798 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Itr_sc001342.1_g00004.1 | genome | Kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 37.5 | 5.5e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
+++WT+eE+ l+ +v ++G+g W+tI + R+ ++k++w++
Itr_sc001342.1_g00004.1 5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPEysgvlYLRSNVDLKDKWRNM 56
79****************************99999**88***********95 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006334 | Biological Process | nucleosome assembly |
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
GO:0009651 | Biological Process | response to salt stress |
GO:0009723 | Biological Process | response to ethylene |
GO:0009733 | Biological Process | response to auxin |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009739 | Biological Process | response to gibberellin |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0009753 | Biological Process | response to jasmonic acid |
GO:0046686 | Biological Process | response to cadmium ion |
GO:0000786 | Cellular Component | nucleosome |
GO:0005730 | Cellular Component | nucleolus |
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
GO:0033613 | Molecular Function | activating transcription factor binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0070491 | Molecular Function | repressing transcription factor binding |
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPEYSGV LYLRSNVDLK DKWRNMTVMA 60 NGWGSREKSR LALKRVHRTS KQDESSLALT NVVQSEEESS EGKRVATSSG SPQNGGSKRS 120 IIRLDNLVMD AINNLKEPGG SNKKTIAAYI EDQYWAPPNF KRLLSAKLKY LTATGKLMKM 180 SRKYRIVPSS LLSDNTRKPP IPILEGRERI LPKVDQYDID MLTKSQIDLE LAKMRSMTPQ 240 EAATAAAQAV AEAEAAIAEA EQAAREAEAA EADAEAALAF AEAAMKTAHG RSTPRMENPD 300 LVDLNPDERV QMSFQPSHSY STLVNMGDFP VTRIRC
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Functional Description ? help
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Source |
Description |
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Publications
? help Back to Top |
- Alexandrov NN, et al.
Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] - Schrumpfová PP, et al.
Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] - Liang SC, et al.
Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] - Fulcher N,Riha K
Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] - Kotliński M, et al.
Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]
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