PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001336.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 156aa    MW: 16872.8 Da    PI: 10.1611
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001336.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.7e-1584142361
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                              ++k  +r+ +NR++A+  R+RKka++  Le kvkeLe++N +L ++l++l++e + l+ 
  Itr_sc001336.1_g00006.1  84 ADKENKRLLRNRVSAQQARERKKAYLTDLEAKVKELETKNAELEERLSTLQNENQMLRH 142
                              799***************************************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-1482146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.20884147IPR004827Basic-leucine zipper domain
PfamPF001701.8E-1484143IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-1386144No hitNo description
Gene3DG3DSA:1.20.5.1707.9E-1786146No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
CDDcd147041.07E-1589138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MQEQAAVSSV AAKFIPSSSE RSSSSALHLE VKEGMESDDE IRRVPEMGGE GGAAPAASGR  60
DGVSAAGTAQ PSGAAQKKRG RSPADKENKR LLRNRVSAQQ ARERKKAYLT DLEAKVKELE  120
TKNAELEERL STLQNENQML RHILKNTTAG SQEARK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A3e-16107146342Transcription factor HY5
2oqq_B3e-16107146342Transcription factor HY5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153781.12e-84PREDICTED: transcription factor HY5-like
SwissprotQ9SM506e-79HY5_SOLLC; Transcription factor HY5
TrEMBLA0A1U8E2N74e-77A0A1U8E2N7_CAPAN; Transcription factor HY5
TrEMBLA0A2G2W5664e-77A0A2G2W566_CAPBA; Uncharacterized protein
TrEMBLA0A2G2ZY994e-77A0A2G2ZY99_CAPAN; transcription factor HY5
TrEMBLA0A2G3CVK74e-77A0A2G3CVK7_CAPCH; Transcription factor HY5
STRINGSolyc08g061130.2.12e-77(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80372430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-50bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]