PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc001304.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 549aa MW: 61583.5 Da PI: 7.3754

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001304.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	303.6	4.8e-93	166	541	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaa 80 lv+lLl++Ae vs++++ +a +l+++ ++ as +g+p+qR+a+yf+ AL+ar+ r++ ++ + ++++ s+ +a Itr_sc001304.1_g00004.1 166 LVQLLLAAAEKVSEHQFDRAIRLVSQCRNSASCTGSPVQRAAFYFADALQARIERQT---GSSGHEDDDRNGVkdgeclASRFNKA 248 689**************************************************33...33333333332223456777888888 PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleet 161 + +++++ P+ ++ +l a q+Il+ v ++ +vH +Df + G+QW +L+qaL++R+ ++++ +R T+++ ++ke++eet Itr_sc001304.1_g00004.1 249 YLILHQTLPFSQVVQLSATQTILDHVVTKPKVHLVDFYLRTGVQWSTLMQALSERAaaedyGQQHYFRFTAIET---TEKEKVEET 331 999*************************************************8888667899****...58*** PP GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247 g+rL++fA+++++pf+fnvl+ +l++l+ e+ ++k +Ea++++ ++ l + +++++les v++++ +l+P v+vv e ea+ Itr_sc001304.1_g00004.1 332 GKRLESFAAQFNLPFSFNVLYIPDLKQLKAEQVEIKAEEAVIIHTSFILRAMISKPLELES----VMRAITKLKPCVMVVQEVEAN 413 *************************************************99999999....***************** PP GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 +ns+sF++rf++al yysa fd+le ++pr++++r+++E+ + i+n+va+eg+er+ r +le Wre ++++G+++ +ls++ Itr_sc001304.1_g00004.1 414 LNSPSFVHRFIDALFYYSAYFDALEDTMPRDDQHRASIEAGSARDGIRNIVAAEGRERVTRSVSLEVWREFFGRFGLEETELSQTC 499 ********************************************************************************** PP GRAS 334 akqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + a++++++++ + v + +slv gWk+ p++s+SaW+ Itr_sc001304.1_g00004.1 500 WAHANMVVQRFAcKSCCAVSGNGKSLVVGWKGTPVYSFSAWK 541 ********88889**********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.603	140	520	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-90	166	541	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MSSNSSAKAY DQGKASSSGK IIDDNKQLAS GFQGHGDDVD LFCAKYGFYQ ENDQPVGVER 60 QFITSNSSNN IQESTKLKTE KAWPPLSPAI LRILGNRSNP FAATTSSSGG GRDHHQKLSA 120 MQIVRLAGER FVQFSDHKFI NINIFKHPYS STLSELCSRD KQDVELVQLL LAAAEKVSEH 180 QFDRAIRLVS QCRNSASCTG SPVQRAAFYF ADALQARIER QTGSSGHEDD DRNGVKDGEC 240 LASRFNKAYL ILHQTLPFSQ VVQLSATQTI LDHVVTKPKV HLVDFYLRTG VQWSTLMQAL 300 SERAAAEDYG QQHYFRFTAI ETTEKEKVEE TGKRLESFAA QFNLPFSFNV LYIPDLKQLK 360 AEQVEIKAEE AVIIHTSFIL RAMISKPLEL ESVMRAITKL KPCVMVVQEV EANLNSPSFV 420 HRFIDALFYY SAYFDALEDT MPRDDQHRAS IEAGSARDGI RNIVAAEGRE RVTRSVSLEV 480 WREFFGRFGL EETELSQTCW AHANMVVQRF ACKSCCAVSG NGKSLVVGWK GTPVYSFSAW 540 KFPSLRRDN

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MSSNSSAKAY DQGKASSSGK IIDDNKQLAS GFQGHGDDVD LFCAKYGFYQ ENDQPVGVER  60
QFITSNSSNN IQESTKLKTE KAWPPLSPAI LRILGNRSNP FAATTSSSGG GRDHHQKLSA  120
MQIVRLAGER FVQFSDHKFI NINIFKHPYS STLSELCSRD KQDVELVQLL LAAAEKVSEH  180
QFDRAIRLVS QCRNSASCTG SPVQRAAFYF ADALQARIER QTGSSGHEDD DRNGVKDGEC  240
LASRFNKAYL ILHQTLPFSQ VVQLSATQTI LDHVVTKPKV HLVDFYLRTG VQWSTLMQAL  300
SERAAAEDYG QQHYFRFTAI ETTEKEKVEE TGKRLESFAA QFNLPFSFNV LYIPDLKQLK  360
AEQVEIKAEE AVIIHTSFIL RAMISKPLEL ESVMRAITKL KPCVMVVQEV EANLNSPSFV  420
HRFIDALFYY SAYFDALEDT MPRDDQHRAS IEAGSARDGI RNIVAAEGRE RVTRSVSLEV  480
WREFFGRFGL EETELSQTCW AHANMVVQRF ACKSCCAVSG NGKSLVVGWK GTPVYSFSAW  540
KFPSLRRDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-37	189	541	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019162025.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	M1DFW3	1e-176	M1DFW3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400088400	1e-177	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13910	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-44	RGA-like 2