PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001287.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 371aa MW: 40945.4 Da PI: 4.9877

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001287.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.2	4.9e-14	13	54	9	50
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++ + +R + i+KKA EL +LCd ++ v+i+s++gkl ++ Itr_sc001287.1_g00006.1 13 KKLCYERRAACIMKKAMELQILCDLKIGVVILSPDGKLESWP 54 5677999**********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0017	1	55	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.46E-13	8	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-13	8	53	IPR002100	Transcription factor, MADS-box
CDD	cd00120	7.68E-10	10	55	No hit	No description
PROSITE profile	PS50066	11.76	13	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-5	19	34	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-5	34	55	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MAMAETSTQE KAKKLCYERR AACIMKKAME LQILCDLKIG VVILSPDGKL ESWPPQLNDV 60 KALLHTCKER PGVKSEKRKD PAAETCSHSC REILVSKLQL LNQREEFIKS AKGKEIATTK 120 KRKGFSEGCL EILNSKLELL KKREMVFLNR SGNEIVSVEG IESLYDGAVV AYGQGDVLTQ 180 NLGPLYDDLG DEYTSIDEFF SFEEDKSNNL VADPQSNGTF KGKEIATMEN MDSGILQYTT 240 THLGAYQCDE NGELTSMNNG ISNKGLALNQ WHHGSSSANH TLQAGSVRFE ACYPPLPLQS 300 SFTALGNGLP PIAAEECGEL QARKKARLQN STAAFNNNLP IFTSTEYWET MLTNAGLIDS 360 TDAMMSLLDD F

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MAMAETSTQE KAKKLCYERR AACIMKKAME LQILCDLKIG VVILSPDGKL ESWPPQLNDV  60
KALLHTCKER PGVKSEKRKD PAAETCSHSC REILVSKLQL LNQREEFIKS AKGKEIATTK  120
KRKGFSEGCL EILNSKLELL KKREMVFLNR SGNEIVSVEG IESLYDGAVV AYGQGDVLTQ  180
NLGPLYDDLG DEYTSIDEFF SFEEDKSNNL VADPQSNGTF KGKEIATMEN MDSGILQYTT  240
THLGAYQCDE NGELTSMNNG ISNKGLALNQ WHHGSSSANH TLQAGSVRFE ACYPPLPLQS  300
SFTALGNGLP PIAAEECGEL QARKKARLQN STAAFNNNLP IFTSTEYWET MLTNAGLIDS  360
TDAMMSLLDD F

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3723	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	3e-09	AGAMOUS-like 16