PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001287.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 310aa    MW: 34968.6 Da    PI: 4.5288
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001287.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.32.3e-141052850
                             HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                              ++  + kR + i+KKA EL +LC+ ++ v+i+s++gkl  ++
  Itr_sc001287.1_g00001.1 10 AKKLCYEKRAACIMKKAMELQILCGLKIGVVILSPDGKLESWP 52
                             5677899***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0014153IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-13665IPR002100Transcription factor, MADS-box
PfamPF003197.0E-14651IPR002100Transcription factor, MADS-box
CDDcd001209.66E-10853No hitNo description
PROSITE profilePS5006611.4931151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAETSTQEKA KKLCYEKRAA CIMKKAMELQ ILCGLKIGVV ILSPDGKLES WPPQLNDVKA  60
LLDACKERRP RVKSDKRKED CREILVSKLQ LLNQREELFK GKEIATGGET LVRSKKRKDF  120
GEQGCLEILN SKLQLLKKRE MLFLNRSGNS EASAEGKQIF SMEEGIESLC DGILLTQNSF  180
TALGNGLTPT ATTSEECGEL QKARLQYPTA ALNNNLPQFT PEDYWEAMFT DVLYKMPTAR  240
ASAAASKLRE PEKIIVTEEQ IDLDEDNEEV EYEEVEEEEE NDDKENGSVN EKKHGSEVYI  300
GDINQDVSDF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151865.13e-94PREDICTED: uncharacterized protein LOC109148578 isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02235.12e-08AGAMOUS-like 51