PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001280.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 222aa MW: 25481.7 Da PI: 6.1482 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.7 | 1.3e-20 | 73 | 126 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eql++Le+ Fe++ +++ e++ +LAk+lgL rq+ vWFqNrRa++k Itr_sc001280.1_g00009.1 73 KKKRLTTEQLDALEKSFEEEIKLDPERKMRLAKELGLHPRQIAVWFQNRRARWK 126 55679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.8 | 5.8e-38 | 73 | 163 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 kk+rl++eq+ +LE+sFeee kL+perK++la+eLgl+prq+avWFqnrRAR+k+kqlE+ +++Lk++++ +++e+++Le+ev +L Itr_sc001280.1_g00009.1 73 KKKRLTTEQLDALEKSFEEEIKLDPERKMRLAKELGLHPRQIAVWFQNRRARWKAKQLERLCDSLKHEFELVSREKQKLEEEVVAL 158 9************************************************************************************* PP HD-ZIP_I/II 88 reelk 92 r+ l+ Itr_sc001280.1_g00009.1 159 RSILR 163 98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.27E-20 | 61 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 68 | 128 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-18 | 70 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.22E-17 | 73 | 129 | No hit | No description |
Pfam | PF00046 | 7.3E-18 | 73 | 126 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 75 | 132 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.5E-5 | 99 | 108 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 103 | 126 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.5E-5 | 108 | 124 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEWNGCNNNN LTRPFVPRPP LPSDNASFSF LYTYNYDQFP GIDMKSGSSS SVQGEGAQFM 60 GGIEKNGLGS HDKKKRLTTE QLDALEKSFE EEIKLDPERK MRLAKELGLH PRQIAVWFQN 120 RRARWKAKQL ERLCDSLKHE FELVSREKQK LEEEVVALRS ILRDEATKKQ QVSTTGHTEM 180 SGEETVESTS IPSCNYNNMF NVDDCTTLMP PPYWPNLPST YP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 128 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157172.1 | 1e-119 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 4e-52 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1S4BPS4 | 3e-78 | A0A1S4BPS4_TOBAC; putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1U7V734 | 3e-78 | A0A1U7V734_NICSY; putative homeobox-leucine zipper protein ATHB-51 | ||||
STRING | XP_009758049.1 | 4e-79 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 2e-54 | homeobox 51 |
Publications ? help Back to Top | |||
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