PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001280.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 445aa MW: 50285 Da PI: 6.0517

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001280.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74	2.4e-23	105	211	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk++++ Itr_sc001280.1_g00006.1 105 KWTDNMVRLLIMVVYYIGDEVGSEGnstdpaagnkkkagagagllQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVND 190 7************99999986433677888889999999***************************************** PP trihelix 67 gekkr.tsessstcpyfdqle 86 + +k+ +++++++ +++ l+ Itr_sc001280.1_g00006.1 191 IIGKGtACKVVENQTLLETLD 211 ***5599999999888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.7E-21	103	236	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010629	Biological Process	negative regulation of gene expression
GO:1900037	Biological Process	regulation of cellular response to hypoxia
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MESNGMYSNM GSGMLGLEMS LHHVPPQQNP MQHQSHSPMV SYVDHRQQSQ PPLRPGAGGT 60 YPSGNKPKIT PGLTLSDDDD PGGPTADQNS ADDGKRKVCP WQRMKWTDNM VRLLIMVVYY 120 IGDEVGSEGN STDPAAGNKK KAGAGAGLLQ KKGKWKSVSR AMMERGFYVS PQQCEDKFND 180 LNKRYKRVND IIGKGTACKV VENQTLLETL DLSPKMKEEA KKLLNSKHLF FREMCAYHNS 240 CAHGGASGSA AADGGSDPTS QTNNHHQKCM HSSENVRIGP NLGPAEVEEP KDNNDEDDED 300 SDDDEDEESE EDEEDEKSRK KAKKTESWSP MMLLEQMSGE LRNVCEDSTR SPGEKRQWIK 360 ARTRQLEEQR VEFQSQALEL EKQRLKWEKF SSKKEREMER EKMMNQRKKL ENERMVLLLH 420 QKELELNDVH HQAYNRTSDP SSVTG

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MESNGMYSNM GSGMLGLEMS LHHVPPQQNP MQHQSHSPMV SYVDHRQQSQ PPLRPGAGGT  60
YPSGNKPKIT PGLTLSDDDD PGGPTADQNS ADDGKRKVCP WQRMKWTDNM VRLLIMVVYY  120
IGDEVGSEGN STDPAAGNKK KAGAGAGLLQ KKGKWKSVSR AMMERGFYVS PQQCEDKFND  180
LNKRYKRVND IIGKGTACKV VENQTLLETL DLSPKMKEEA KKLLNSKHLF FREMCAYHNS  240
CAHGGASGSA AADGGSDPTS QTNNHHQKCM HSSENVRIGP NLGPAEVEEP KDNNDEDDED  300
SDDDEDEESE EDEEDEKSRK KAKKTESWSP MMLLEQMSGE LRNVCEDSTR SPGEKRQWIK  360
ARTRQLEEQR VEFQSQALEL EKQRLKWEKF SSKKEREMER EKMMNQRKKL ENERMVLLLH  420
QKELELNDVH HQAYNRTSDP SSVTG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019154975.1	0.0	PREDICTED: uncharacterized protein LOC109151438
TrEMBL	A0A2G9GXC2	1e-153	A0A2G9GXC2_9LAMI; Transcription factor GT-2
STRING	evm.model.supercontig_5.104	1e-151	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6710	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-89	sequence-specific DNA binding transcription factors