PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001279.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 320aa MW: 36453.2 Da PI: 9.6025

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001279.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.4	2.8e-32	195	248	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Itr_sc001279.1_g00013.1 195 PRMRWTSTLHSRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 248 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.43E-15	192	248	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-28	193	248	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-24	195	248	IPR006447	Myb domain, plants
Pfam	PF00249	5.3E-7	196	247	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MELFPAQPDL SLQISPPTTK QQKITEDNTH HHHEMDLGFW KRALDTKNQS FSNSKPSCNF 60 DLSLSNHPNH SSSSPSPTSV PNNPNIFHYH HPNTIHQNNL YSHHLFQHHQ LHQQQQTGPD 120 FGFLRPIRGI PVYYQTPSSN SSHPFPFPHI PFDNNSVTAT SSSSAHQHHH QTSAGLMRSR 180 FLSSRFPAKR SMRAPRMRWT STLHSRFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK 240 SHLQMYRTVK TTDKAAAATS GQSEVFDNGS SGETSEDLTL DIRTSRKSDE FSVQQRRTNM 300 HSNQDNNDNY HHVLWSNSSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	196	250	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00174	DAP	Transfer from AT1G32240	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019190662.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X2
Swissprot	Q9C616	1e-74	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A371F7I0	1e-102	A0A371F7I0_MUCPR; Putative transcription factor KAN2 (Fragment)
STRING	VIT_02s0012g01940.t01	1e-101	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-46	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]