PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 1045aa MW: 117155 Da PI: 6.2636

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001253.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	172.3	7.1e-54	46	159	4	116
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 e + rwlk+ e++ iL+n+e+h++++e++++p sgsl+L+n++++r+frkDG+sw++k+dg+tv E+he+LKvg+ e+l+cyYah+ Itr_sc001253.1_g00002.1 46 EaQGRWLKPAEVLFILQNHENHQIAHEPPQKPGSGSLFLFNKRVLRFFRKDGHSWRRKRDGRTVGEAHERLKVGSAEALNCYYAHG 131 4489******************************************************************************** PP CG-1 89 eenptfqrrcywlLeeelekivlvhyle 116 e+np+fqrr+yw+L+ ++e+ivlvhy++ Itr_sc001253.1_g00002.1 132 EQNPNFQRRSYWMLDPAYEHIVLVHYRD 159 ************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.671	40	166	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.9E-76	43	161	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.8E-47	47	159	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.6E-10	457	544	IPR013783	Immunoglobulin-like fold
CDD	cd00102	1.52E-7	460	544	No hit	No description
Pfam	PF01833	3.9E-10	460	543	IPR002909	IPT domain
SuperFamily	SSF81296	3.36E-19	460	544	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	2.6E-14	659	751	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.194	659	751	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.08E-15	663	753	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.12E-12	664	751	No hit	No description
Pfam	PF12796	2.9E-6	679	752	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.713	692	724	IPR002110	Ankyrin repeat
SMART	SM00248	0.0045	692	721	IPR002110	Ankyrin repeat
SMART	SM00248	3800	731	760	IPR002110	Ankyrin repeat
SMART	SM00015	15	809	831	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.858	810	839	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	6.4	866	888	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.638	867	896	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.016	869	887	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	120	909	931	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence Send to blast
MLMYFNLMEG NRVVQDEPSF GSSLTAHEAL IIRFHNGYNF SDLIREAQGR WLKPAEVLFI 60 LQNHENHQIA HEPPQKPGSG SLFLFNKRVL RFFRKDGHSW RRKRDGRTVG EAHERLKVGS 120 AEALNCYYAH GEQNPNFQRR SYWMLDPAYE HIVLVHYRDI SELICPVYGC LYFTCLSVNV 180 YAICSGCKTQ GRQTTGFMSQ FSPVSSTSSQ SPSPYSTQYA GSSVVVNESF EPYSSPGSVE 240 ISSHAATTSN GISQSSVREG VDEVSSSSAR EMSLALRKLE EQLSLNDDSF KEIDPLYNDI 300 DNSDGVQNIL DDHRTFTRMP EDSNSLLLQQ HSGYLSEHNH QIPGYEVDPW KEALEGDGNY 360 LDSKLYGKYV YTDDKNMLLA REPVETPENM WFNFDGKEAQ NHSITIPQQV EDFKYPLYSP 420 AVNTYRTDPI QYTTLFNQGQ IGISLEADLG LTIAQKQKFT IKEISPDWGY ATAATKVVII 480 GSFLCDPSES EWVCMFGDVE VPVQIIQEGV IRCQAPPHLP GKVNLCITTG NRESCSEVRE 540 FEYRVESTSK INSTVPETQC TNKSPEELLL LIRFGQMLLS DGSNGKIDSS GLGNDYLEKV 600 KAGEDSWSQV IEALLVGSST PNLTIDWFLQ ELLKDKLQQW IFSKFQGKTN SSDCMLSRKE 660 QGIIHMVAGL GFEWALHPIL NAGVSVNFRD IAGWTALHWA ARFGREKMVA ALIASGASAG 720 AVTDPTKQDP IGKTPAAIAA NCGHKGLAGY LSEVALTSHL SSLTLEESEL SKGSADVEAE 780 KTIVSVSTTS ATTNEDELSL KHTLAAVRNA AQAAARIQSA FRAHSFRKRQ QKEVVSFAAG 840 DEYYTLSNDI QGLSAASKLA FRSTRDYNSA ALAIQKKYRG WKGRKDFLTF RQKVVKIQVL 900 SLPPFLYSLS KFYAIHVYAH VRGYQVRKQY KVCWAVGVLE KVVLRWRRRG VGLRGFRHET 960 DSIDETEDED ILKVFRKQKV DATIDEAVSR VLSMVESPEA RQQYHRILEK YRQAKAELQG 1020 VETEATSSHD PSISSMENDD IYQYA

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence Send to blast

MLMYFNLMEG NRVVQDEPSF GSSLTAHEAL IIRFHNGYNF SDLIREAQGR WLKPAEVLFI  60
LQNHENHQIA HEPPQKPGSG SLFLFNKRVL RFFRKDGHSW RRKRDGRTVG EAHERLKVGS  120
AEALNCYYAH GEQNPNFQRR SYWMLDPAYE HIVLVHYRDI SELICPVYGC LYFTCLSVNV  180
YAICSGCKTQ GRQTTGFMSQ FSPVSSTSSQ SPSPYSTQYA GSSVVVNESF EPYSSPGSVE  240
ISSHAATTSN GISQSSVREG VDEVSSSSAR EMSLALRKLE EQLSLNDDSF KEIDPLYNDI  300
DNSDGVQNIL DDHRTFTRMP EDSNSLLLQQ HSGYLSEHNH QIPGYEVDPW KEALEGDGNY  360
LDSKLYGKYV YTDDKNMLLA REPVETPENM WFNFDGKEAQ NHSITIPQQV EDFKYPLYSP  420
AVNTYRTDPI QYTTLFNQGQ IGISLEADLG LTIAQKQKFT IKEISPDWGY ATAATKVVII  480
GSFLCDPSES EWVCMFGDVE VPVQIIQEGV IRCQAPPHLP GKVNLCITTG NRESCSEVRE  540
FEYRVESTSK INSTVPETQC TNKSPEELLL LIRFGQMLLS DGSNGKIDSS GLGNDYLEKV  600
KAGEDSWSQV IEALLVGSST PNLTIDWFLQ ELLKDKLQQW IFSKFQGKTN SSDCMLSRKE  660
QGIIHMVAGL GFEWALHPIL NAGVSVNFRD IAGWTALHWA ARFGREKMVA ALIASGASAG  720
AVTDPTKQDP IGKTPAAIAA NCGHKGLAGY LSEVALTSHL SSLTLEESEL SKGSADVEAE  780
KTIVSVSTTS ATTNEDELSL KHTLAAVRNA AQAAARIQSA FRAHSFRKRQ QKEVVSFAAG  840
DEYYTLSNDI QGLSAASKLA FRSTRDYNSA ALAIQKKYRG WKGRKDFLTF RQKVVKIQVL  900
SLPPFLYSLS KFYAIHVYAH VRGYQVRKQY KVCWAVGVLE KVVLRWRRRG VGLRGFRHET  960
DSIDETEDED ILKVFRKQKV DATIDEAVSR VLSMVESPEA RQQYHRILEK YRQAKAELQG  1020
VETEATSSHD PSISSMENDD IYQYA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155745.1	0.0	PREDICTED: calmodulin-binding transcription activator 4 isoform X1
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A484MGI9	0.0	A0A484MGI9_9ASTE; Uncharacterized protein
STRING	XP_009617256.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]