PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc001240.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 276aa MW: 29857.3 Da PI: 5.9862 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.2 | 9.2e-11 | 158 | 205 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Itr_sc001240.1_g00007.1 158 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 205 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.62E-9 | 152 | 209 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-17 | 152 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-17 | 154 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 154 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-8 | 158 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-10 | 160 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 276 aa Download sequence Send to blast |
MDPPIINEAS FSAANPAAYT LAEIWPFTAS GNGGGHVGGG LGLRMCSFPG LAEAAANSVD 60 ESTVTEQSGS RGNVAGERKR RGVNSGDESS KVVSANDLNE CSDKRMKASE SKDENGGAKV 120 EAESSSRTVS KPAEHSNKPE PPKDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL 180 VPGCNKVIGK ALVLDEIINY IQSLQCQVEF LSMKLEAVNS RMNPTLEAFS QKDLAPAGFD 240 APGMLLNTQP PREYTQETQH PEWLHMQVGS SFERAT |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019154446.1 | 0.0 | PREDICTED: transcription factor bHLH79-like | ||||
Swissprot | Q9LV17 | 2e-81 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A1U8G4D0 | 1e-136 | A0A1U8G4D0_CAPAN; transcription factor bHLH79 | ||||
TrEMBL | A0A2G3AW72 | 1e-136 | A0A2G3AW72_CAPCH; Transcription factor bHLH79 | ||||
STRING | XP_009631983.1 | 1e-132 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1287 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62610.1 | 1e-83 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|