PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001238.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WOX
Protein Properties Length: 520aa    MW: 57733 Da    PI: 9.7488
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001238.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.23.3e-14428485557
                              SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   5 ttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              ++++ eq++++e+lF++   +ps+ee++++  +l    ++ +++V++WFqNr+ + k+
  Itr_sc001238.1_g00004.1 428 WNMKLEQIRIMESLFNSgVVNPSREEIRRIRIRLeeyeEVGDANVFYWFQNRKSRSKN 485
                              89999***********99*************************************995 PP
2Wus_type_Homeobox88.18.8e-29427487565
        Wus_type_Homeobox   5 RWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                               W+ + eQi+i+e+l++sG+++P++eei+ri+ +Leey +++d+NVfyWFQNrk+R+++kq
  Itr_sc001238.1_g00004.1 427 MWNMKLEQIRIMESLFNSGVVNPSREEIRRIRIRLEEYEEVGDANVFYWFQNRKSRSKNKQ 487
                              6**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF143273.6E-16968IPR025742Cleavage stimulation factor subunit 2, hinge domain
PfamPF143044.8E-10380411IPR026896Transcription termination and cleavage factor, C-terminal domain
SMARTSM003892.1E-4423490IPR001356Homeobox domain
PfamPF000468.4E-12428484IPR001356Homeobox domain
SuperFamilySSF466892.28E-8429489IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-4429490IPR009057Homeodomain-like
PROSITE profilePS500719.41433486IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009749Biological Processresponse to glucose
GO:0031124Biological ProcessmRNA 3'-end processing
GO:0035194Biological Processposttranscriptional gene silencing by RNA
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAGKEVAGEG LSANIAGMSK NQLYDIMCQM KKLMEQNEKQ ARQILIQNPT LARDLFQAQI  60
MLGMVKPAQP MSTPTPATQS MQPSPSHVQQ SSNQAAPAVS AQSGLQDQMR KQHHSQPPLS  120
MSSSIAPSSN LQPPSLPSHP LQQVQQPKGH ASAPSAPMSL PQSAQAPNMP PLPHHSAAQP  180
PPHLQSHMPS APTQLDQSIQ TSGIQHLPLQ PPLPPQMRPS MQSFPQQIHP QMGPNVGFQQ  240
SGTQMHHSQP MFHAAKPPAP MGPSFMQGQP QLPNQPPPQS LYQRSNAQLF KPWKTFLTLF  300
DVEPCALCPK LFVAGSSHIR TDFNQVGSSM PTDRGSAWIP GLPESAPTGQ LPGPPPPFPS  360
QMGPGNQPAR QPALTPEMEQ ALLQQVMSLT PEQINSLPPE QRTQVLQLQQ MLPGVEEMTL  420
ELKPMPMWNM KLEQIRIMES LFNSGVVNPS REEIRRIRIR LEEYEEVGDA NVFYWFQNRK  480
SRSKNKQHQT LEFGKQAKQE NGYEEKRRSK RQICPHHFSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189813.10.0PREDICTED: cleavage stimulating factor 64
TrEMBLA0A1J6IX011e-136A0A1J6IX01_NICAT; Uncharacterized protein
STRINGXP_009614575.11e-136(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.16e-17homeobox-3