PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001232.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 317aa MW: 34528.6 Da PI: 8.7747

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001232.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.2e-05	43	188	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC........................................................ CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas....................................................... 31 +r+ + erE+ R+++N+ f L l +++ Itr_sc001232.1_g00009.1 43 KRVHKAEREKMKREHLNDLFLSLANALAWSFyfsqkiqspkpraltpqsnralermqitvalvdkakcrpivgahkdlstlgimpt 128 79999************************999999999999999998888888888888888888888888888888888888888 PP .......................................TTS-STCHHHHHHHHHHHHHH CS HLH 32 .....................................kapskKlsKaeiLekAveYIksL 54 p + + Ka+iL A++ +k+L Itr_sc001232.1_g00009.1 129 lsllsfepwslglnvsahkgsahfghnahnagafvaaEMPEQINGKASILNGAIQSVKEL 188 888888888888888888888888888888888888777888888888888888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.1E-5	42	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.72E-8	43	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.72E-8	166	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-5	168	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MESERPAAPA VEKGTTPAAP SPNGCLDLSG LGIDKKSKGK VPKRVHKAER EKMKREHLND 60 LFLSLANALA WSFYFSQKIQ SPKPRALTPQ SNRALERMQI TVALVDKAKC RPIVGAHKDL 120 STLGIMPTLS LLSFEPWSLG LNVSAHKGSA HFGHNAHNAG AFVAAEMPEQ INGKASILNG 180 AIQSVKELLA QIEQLRRGNA TLLSESQYVS MEKTELQDEN YALVDQIGKL QSEIKDRRVE 240 LSLDLNLAPP ECQQPSTSET AFQITNPVYV VPQVYPLPGA AQPAPMPPPV SKPLPRYPTL 300 ADAWPSQILE KQGDLGL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019198125.1	5e-94	PREDICTED: transcription factor bHLH47-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4307	19	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-16	bHLH family protein