PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001202.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 104aa    MW: 11461.4 Da    PI: 9.3851
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001202.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.57.8e-37798190
                   DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
                             +C aCk+lrrkC+k+C++apyf ++q  +++fa+vhk+FGasn +k+l a+p ++r +a+ +l+yeA ar+rdPvyG+vg+i++lqqq
  Itr_sc001202.1_g00007.1  7 PCGACKFLRRKCVKGCIFAPYFESDQlgTAHFAAVHKVFGASNASKMLMAIPANRRLEAVVTLCYEALARVRDPVYGCVGHIFTLQQQ 94
                             7***********************99666**********************************************************9 PP

                   DUF260 87 leql 90
                              e+ 
  Itr_sc001202.1_g00007.1 95 GETY 98
                             8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.1296104IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-36797IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MSGVGGPCGA CKFLRRKCVK GCIFAPYFES DQLGTAHFAA VHKVFGASNA SKMLMAIPAN  60
RRLEAVVTLC YEALARVRDP VYGCVGHIFT LQQQGETYRH WPRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-35394796LOB family transfactor Ramosa2.1
5ly0_B8e-35394796LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152220.13e-62PREDICTED: LOB domain-containing protein 19-like
SwissprotO813222e-49LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A061DTV86e-54A0A061DTV8_THECC; LOB domain-containing protein 31
TrEMBLA0A1U8FGA26e-54A0A1U8FGA2_CAPAN; LOB domain-containing protein 31
TrEMBLA0A2G2XNX86e-54A0A2G2XNX8_CAPBA; LOB domain-containing protein 31
TrEMBLA0A2G3AHC86e-54A0A2G3AHC8_CAPAN; LOB domain-containing protein 19
TrEMBLA0A2G3DDY26e-54A0A2G3DDY2_CAPCH; LOB domain-containing protein 31
STRINGEOX961941e-54(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.17e-52LOB domain-containing protein 31