PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001182.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 375aa MW: 42501.4 Da PI: 5.4814

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001182.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38	3.7e-12	90	120	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 ++k++rr+++NReAAr+sR+RKka+i++Le Itr_sc001182.1_g00002.1 90 ADKAQRRLAQNREAARKSRLRKKAYIQQLEM 120 79***************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.2E-5	88	148	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.4E-8	89	131	No hit	No description
Pfam	PF00170	6.2E-9	90	120	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.519	90	127	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.38E-8	92	125	No hit	No description
PROSITE pattern	PS00036	0	95	110	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.9E-28	177	252	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MVSYEALNMK MSSPVTQFGP AGRMGIYEQL HQMSVWEDTL RSDIIPCSGD CMVTQADDKS 60 EYMSNESVVP SGSGDNQGDN QAHQPGKGTA DKAQRRLAQN REAARKSRLR KKAYIQQLEM 120 SRLKLAQLEL EIEKTRHQGV YMLGPTTKMG MYGTINPGIV AFEMEYAHWV EEQQKKISEL 180 RSILLSNTSS DVELQLVVEN VLNHYYELFR MRAEVAKADV FYLLSGMWRT SLERFFLWIG 240 GFRPSELINA VMPQLEPLTD EQLFNVCNLR DCCQQAEEAL TQGMDKLQQS LAQSMASMST 300 DAVIYGSQMA SAMEKLESIE SFVNQADNLR KQTLQQMSSI LTTHQAARGL LAFGEYFQRL 360 HALSSLWAAR PREMD

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MVSYEALNMK MSSPVTQFGP AGRMGIYEQL HQMSVWEDTL RSDIIPCSGD CMVTQADDKS  60
EYMSNESVVP SGSGDNQGDN QAHQPGKGTA DKAQRRLAQN REAARKSRLR KKAYIQQLEM  120
SRLKLAQLEL EIEKTRHQGV YMLGPTTKMG MYGTINPGIV AFEMEYAHWV EEQQKKISEL  180
RSILLSNTSS DVELQLVVEN VLNHYYELFR MRAEVAKADV FYLLSGMWRT SLERFFLWIG  240
GFRPSELINA VMPQLEPLTD EQLFNVCNLR DCCQQAEEAL TQGMDKLQQS LAQSMASMST  300
DAVIYGSQMA SAMEKLESIE SFVNQADNLR KQTLQQMSSI LTTHQAARGL LAFGEYFQRL  360
HALSSLWAAR PREMD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019154840.1	0.0	PREDICTED: transcription factor TGA7-like isoform X2
Refseq	XP_019154841.1	0.0	PREDICTED: transcription factor TGA7-like isoform X2
Refseq	XP_019154842.1	0.0	PREDICTED: transcription factor TGA7-like isoform X2
Swissprot	Q93ZE2	1e-137	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A3Q7G6X7	0.0	A0A3Q7G6X7_SOLLC; Uncharacterized protein
STRING	XP_009776929.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-126	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]