PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc001175.1_g00014.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 183aa MW: 20258.6 Da PI: 6.3828

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001175.1_g00014.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.9	1.4e-42	19	117	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrrkC +dC++apyfpae+p++fanvh++FGasnv k+l+a+p+++r+da++sl+yeAear++dPvyG+v+ i+ lq++ Itr_sc001175.1_g00014.1 19 PCAACKFLRRKCLPDCIFAPYFPAEEPQQFANVHRIFGASNVGKTLSAIPPHQRQDAVNSLAYEAEARTKDPVYGCVAAISVLQRH 104 7*********************************************************************************** PP DUF260 87 leqlkaelallke 99 + +l++el+ +++ Itr_sc001175.1_g00014.1 105 VIRLQKELDDTNA 117 *****998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.511	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-42	19	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MSFSSSPSSS SSSSYSNPPC AACKFLRRKC LPDCIFAPYF PAEEPQQFAN VHRIFGASNV 60 GKTLSAIPPH QRQDAVNSLA YEAEARTKDP VYGCVAAISV LQRHVIRLQK ELDDTNADLM 120 RYTAKPHPHH HQGYPGMEFV TMNQTAEYRD NNQQRASDNE FGMPPPAAGD LSAYYPEVVD 180 ADC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-57	9	122	1	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-57	9	122	1	114	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019183210.1	8e-97	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_019183211.1	8e-97	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_019183212.1	8e-97	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	3e-62	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A068U181	1e-66	A0A068U181_COFCA; Uncharacterized protein
STRING	XP_009597524.1	1e-66	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	4e-62	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]