PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001169.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 434aa    MW: 47723.6 Da    PI: 9.2034
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001169.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-057092123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Itr_sc001169.1_g00004.1 70 FVCEICNKGFQRDQNLQLHRRGH 92
                             89*******************88 PP
2zf-C2H212.10.0006147169123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k++  +s+ k H + +
  Itr_sc001169.1_g00004.1 147 WKCDKCSKRYAVQSDWKAHSKIC 169
                              58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-76992No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.7E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497092IPR007087Zinc finger, C2H2
SMARTSM003550.0177092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM0035584112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-7142167No hitNo description
SMARTSM00355140147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MIKAVQLVDD SMSNLTSASN DNAISISSTQ QQPSTTNQAV KRKRNQAGNP DPEAEVVALS  60
PNTLFATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNKEEVVKKK VYVCPETSCV  120
HHDPARALGD LTGIKKHYSR KHGEKKWKCD KCSKRYAVQS DWKAHSKICG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAE ESARSSSLTP LPNALFSTQP PPPLSATATS LQTLHNLQAT  240
FNHLRQPAEM PPWLACPPPL PPPPPLKATG PTQFLENPNP SSLLVSPPHM SATALLQKAA  300
QLGVTSNNTI ASTGNLIRPH HHHHQNQNQN QNQIHHHMMG TAAAGFFSSR EELASSYGTN  360
KPAAGHASLT TGCMEMMGGT TGSDTTGFYY HHQGFNGGRE NTDIEGLNTR DFLSLTASFS  420
SSKGFSQNSA CWPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36143209369Zinc finger protein JACKDAW
5b3h_F2e-36143209369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161922.10.0PREDICTED: protein indeterminate-domain 11-like
RefseqXP_019161923.10.0PREDICTED: protein indeterminate-domain 11-like
SwissprotQ8H1F51e-116IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2R6Q3141e-134A0A2R6Q314_ACTCH; Protein indeterminate-domain like
STRINGPOPTR_0006s24410.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.16e-96C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]