PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc001167.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 438aa MW: 48311.1 Da PI: 4.7576

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001167.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.6e-09	228	261	6	32
HHHHHHHHHHHHHHHHHHHCTSCC.C........ CS HLH 6 nerErrRRdriNsafeeLrellPk.as......k 32 ++ErrRR+r+N++++ Lr+++Pk + + Itr_sc001167.1_g00009.1 228 LMAERRRRKRLNDRLSMLRSIVPKiSKvggsvpS 261 589********************95535555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.645	222	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.81E-9	226	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-5	228	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-6	228	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-10	229	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-10	298	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.81E-9	298	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00396	364	404	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MEYYENGFLE ELLALRSNNS WEAGDIIPMG MGMNRNIDDD FYCYNNNYYY SNNNNNNVVN 60 NGNNGGFDCV EEEKQITVPI IPGGACCSAA AAATAATSTA TTASFDDCYA NYLPFEQSFN 120 SYSPCFFNEL YTELSPQLTE SSNTKLGTPP PFPGYQEELL SSSPAGIFDE EANNCFRNNP 180 HSCKMEPAVY GGGGCEVVEA GVSFNIGSSG PEKKPKSKKL HGQPSKNLMA ERRRRKRLND 240 RLSMLRSIVP KISKVGGSVP SAHNEPLSAH WVGGPVSGAT RSHPTGQEGD TPTLLLLRIR 300 TSILGDTIDY MKELLERINH LQEEMEVGPD QLRLMSIFKD VKPDELSVRN SPKFDVERRE 360 VSDTRVEICC SAKPGLLLST VTTLEALGLE IQQCVISCFN DFAFRASCTQ ELEQRGVLNT 420 EEIKQALFRN AGYGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MEYYENGFLE ELLALRSNNS WEAGDIIPMG MGMNRNIDDD FYCYNNNYYY SNNNNNNVVN  60
NGNNGGFDCV EEEKQITVPI IPGGACCSAA AAATAATSTA TTASFDDCYA NYLPFEQSFN  120
SYSPCFFNEL YTELSPQLTE SSNTKLGTPP PFPGYQEELL SSSPAGIFDE EANNCFRNNP  180
HSCKMEPAVY GGGGCEVVEA GVSFNIGSSG PEKKPKSKKL HGQPSKNLMA ERRRRKRLND  240
RLSMLRSIVP KISKVGGSVP SAHNEPLSAH WVGGPVSGAT RSHPTGQEGD TPTLLLLRIR  300
TSILGDTIDY MKELLERINH LQEEMEVGPD QLRLMSIFKD VKPDELSVRN SPKFDVERRE  360
VSDTRVEICC SAKPGLLLST VTTLEALGLE IQQCVISCFN DFAFRASCTQ ELEQRGVLNT  420
EEIKQALFRN AGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	237	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155846.1	0.0	PREDICTED: transcription factor bHLH61-like
Swissprot	Q9LSL1	1e-69	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A1S4BNM4	1e-106	A0A1S4BNM4_TOBAC; transcription factor bHLH93-like
STRING	XP_009623441.1	1e-106	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-62	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]