PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001164.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 263aa    MW: 29666.1 Da    PI: 5.4014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001164.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.8e-30126185159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +C vkkkv+rs ed+++++ +YegeHnh+
  Itr_sc001164.1_g00001.1 126 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCLVKKKVQRSVEDKSILIAIYEGEHNHP 185
                              58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-29119187IPR003657WRKY domain
PROSITE profilePS5081126.624121187IPR003657WRKY domain
SuperFamilySSF1182901.96E-25123187IPR003657WRKY domain
SMARTSM007741.7E-32126186IPR003657WRKY domain
PfamPF031064.9E-24127185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGSCLEHNSP SMDIDLNADV NEIPMRDGEH DTMLEEELKE TRAENKRLSA ALSAMFENYG  60
SLQSQLLDLM QERSWKRMKS DRDTTTCGSS EIGYDEASVS KRPREIRTNI SRVHVQTDPS  120
DTSLIVKDGY QWRKYGQKVT RDNPSPRAYY KCSFAPSCLV KKKVQRSVED KSILIAIYEG  180
EHNHPHPSET TQTFTLASQT SNLGLGFHSN IQQRSSCDST IMDAKEIQQL LVEKMASSLT  240
NDHSFTEALA AAISERILDN PLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-191251871374WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179284.11e-164PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A2R6Q2K43e-77A0A2R6Q2K4_ACTCH; WRKY transcription factor 40
STRINGXP_009610348.13e-77(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45002242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.17e-64WRKY DNA-binding protein 40