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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Itr_sc001159.1_g00004.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
LBD |
| Protein Properties |
Length: 268aa MW: 28974.2 Da PI: 7.0275 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc001159.1_g00004.1 | genome | Kazusa | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 121 | 6.3e-38 | 52 | 151 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
+C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqq
Itr_sc001159.1_g00004.1 52 PCGACKFLRRKCVSSCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTISYEAQARLSDPVYGCVSTILALQQ 137
7***********************9989********************************************************** PP
DUF260 86 qleqlkaelallke 99
q+++++++ +++++
Itr_sc001159.1_g00004.1 138 QMKSHQEDGDEVRH 151
******99887765 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
| GO:1900150 | Biological Process | regulation of defense response to fungus |
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MDAQSHPHSD GGASSDAAPR RKCTGKRAAP EPGATPPPAP APAPAAITIQ APCGACKFLR 60
RKCVSSCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLLH IPANRRHDAV VTISYEAQAR 120
LSDPVYGCVS TILALQQQMK SHQEDGDEVR HTGQVASLQA ELAMVQTQIM NSRFAVANAL 180
QTSQQQQQHQ QQQQQHLQQH AALQPAYSNT SSASNNLLNI SNFSSNFDLT TGAPNFDPIV 240
QLSHPSQEEE EDEEQSHNPI AFTNHMFR
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