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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001155.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NF-YB | ||||||||
Protein Properties | Length: 178aa MW: 20234 Da PI: 4.4949 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 62.3 | 1e-19 | 11 | 81 | 3 | 73 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalat 73 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c++e+r+ti+++ +l al + Itr_sc001155.1_g00005.1 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNKEERRTIAPEHVLKALED 81 6899***************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.6E-28 | 7 | 82 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.56E-25 | 12 | 84 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-22 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.7E-5 | 104 | 164 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MESMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE 60 VCNKEERRTI APEHVLKALE DTNLSCRGQS IFLSKVLTIP KDFEVLGFGD YIEEVYAAYE 120 QHRLETMDTV RAGKWNNVAE MTEEEALAEQ QRMFAEARTR MNNGIVVPKQ SDPEPEHK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 5e-30 | 12 | 158 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196206.1 | 1e-106 | PREDICTED: protein Dr1 homolog | ||||
Refseq | XP_019196207.1 | 1e-106 | PREDICTED: protein Dr1 homolog | ||||
Refseq | XP_019196208.1 | 1e-106 | PREDICTED: protein Dr1 homolog | ||||
Swissprot | P49592 | 2e-83 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A484NC55 | 4e-94 | A0A484NC55_9ASTE; Uncharacterized protein | ||||
STRING | Migut.D01587.1.p | 9e-90 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3820 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-87 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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