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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001141.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 102aa MW: 11586.4 Da PI: 5.6741 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.8 | 9.4e-30 | 3 | 89 | 15 | 101 |
DUF260 15 dCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 C++ pyfp ++p++fa+vhk+FGa+n k+lk+++e +r d+++sl+yeA++r++dPvyG+vg+++ lqq++ + +++la+++++ Itr_sc001141.1_g00001.1 3 FCIFLPYFPPNDPQRFAVVHKIFGANNAGKMLKQVEEYKRGDVAESLYYEAQCRVEDPVYGCVGIVTLLQQEMYSFESQLAKIEAQ 88 5********************************************************************************99887 PP DUF260 101 l 101 + Itr_sc001141.1_g00001.1 89 I 89 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.607 | 1 | 89 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-28 | 4 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MHFCIFLPYF PPNDPQRFAV VHKIFGANNA GKMLKQVEEY KRGDVAESLY YEAQCRVEDP 60 VYGCVGIVTL LQQEMYSFES QLAKIEAQIQ LLKAQGVATP IL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-28 | 4 | 93 | 26 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-28 | 4 | 93 | 26 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019198082.1 | 1e-64 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 7e-34 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
TrEMBL | A0A1S3YTT8 | 4e-44 | A0A1S3YTT8_TOBAC; LOB domain-containing protein 24-like | ||||
TrEMBL | A0A1U7YHK4 | 4e-44 | A0A1U7YHK4_NICSY; LOB domain-containing protein 24-like | ||||
STRING | XP_009798305.1 | 6e-45 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 3e-36 | LOB domain-containing protein 23 |