PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 248aa MW: 27636 Da PI: 8.5164

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001135.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00068	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Itr_sc001135.1_g00008.1 100 YECKTCNRVFPSFQALGGHRASH 122 99**********99999998887 PP
2	zf-C2H2	14.1	0.00014	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Itr_sc001135.1_g00008.1 167 HECSICGAEFSSGQALGGHMRRH 189 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.61E-9	99	122	No hit	No description
Pfam	PF13912	4.7E-14	99	124	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.06	100	122	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.388	100	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.61E-9	162	189	No hit	No description
Pfam	PF13912	9.6E-13	167	190	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	167	189	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	167	189	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	169	189	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MEGFEVRKRE ESSICTMKKR RTKRPRHHDT SSSLSSFSDN SDHRSLSNHS GIEFNNHHRV 60 EEEEDMAKCL MLLSQGHVRK PPPSSSPPSA AAAGMNREVY ECKTCNRVFP SFQALGGHRA 120 SHRKPKAAEQ NQESVDEDVT TLSLQIPGRA VVSVSSPPRN KVSNRIHECS ICGAEFSSGQ 180 ALGGHMRRHR PLPTAADQEI KKPSRHPLAL DLNLPAPEDD HREITKFSFA AKEQVIVFSA 240 SPLVDCHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	20	RKREESSICTMKKRR
2	16	23	MKKRRTKR
3	17	22	KKRRTK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019167775.1	1e-127	PREDICTED: zinc finger protein ZAT5-like
Swissprot	Q681X4	7e-50	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	V4SM30	2e-69	V4SM30_9ROSI; Uncharacterized protein
STRING	XP_006493540.1	5e-70	(Citrus sinensis)
STRING	XP_006428462.1	3e-70	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-50	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]