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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Itr_sc001115.1_g00003.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
HD-ZIP |
| Protein Properties |
Length: 195aa MW: 21859.2 Da PI: 8.2223 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc001115.1_g00003.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.1 | 1.7e-19 | 21 | 73 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ ++t++q++ Le+ F +n++++ e++ +LA+ lg++ rqV +W+qNrRa++k
Itr_sc001115.1_g00003.1 21 KKRLTQDQVKLLEASFDSNKKLDPERKFQLARDLGVPPRQVAIWYQNRRARWK 73
5679************************************************9 PP
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| 2 | HD-ZIP_I/II | 112.1 | 3.5e-36 | 20 | 111 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87
+k+rl+++qvklLE sF++++kL+perK +lar+Lg+ prqva+W+qnrRAR+k++ lE dy+aL+ ++++ +e+++Le+e+ +L
Itr_sc001115.1_g00003.1 20 NKKRLTQDQVKLLEASFDSNKKLDPERKFQLARDLGVPPRQVAIWYQNRRARWKSQSLELDYSALQVKLESALAEKRHLEREMGKL 105
79************************************************************************************ PP
HD-ZIP_I/II 88 reelke 93
reelk+
Itr_sc001115.1_g00003.1 106 REELKR 111
***986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009646 | Biological Process | response to absence of light |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 195 aa
Download sequence Send
to blast |
MNFLNSQTKQ KTHSSSLNHN KKRLTQDQVK LLEASFDSNK KLDPERKFQL ARDLGVPPRQ 60
VAIWYQNRRA RWKSQSLELD YSALQVKLES ALAEKRHLER EMGKLREELK RAEERVLVVG 120
GSSSQGQGGG ATLARVSSFS PPNYNSSCCD EGMSSSFHDE EGLQFEELYA SLVGAEDGSN 180
TNSGSSWANG KDFWG
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