PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc001113.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 209aa MW: 23812 Da PI: 5.0362

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001113.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.7	1.3e-35	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+lrr+C+++Cv+apyf+ +q +++fa+vhk+FGasnv+k+l +lp + r +a+ ++ yeA ar+++P yG+v+ il+lqq Itr_sc001113.1_g00009.1 7 SCGACKFLRRRCSSGCVFAPYFCYDQaASNFAAVHKVFGASNVSKMLLHLPVDCRGEAALAISYEAIARMQNPKYGCVAQILTLQQ 92 6**********************978****************************************************** PP DUF260 86 qleqlkaelallkee 100 q+e+lk+e++ +++ Itr_sc001113.1_g00009.1 93 QVENLKQEIENFEKQ 107 ******9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.176	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-33	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MTGPGSSCGA CKFLRRRCSS GCVFAPYFCY DQAASNFAAV HKVFGASNVS KMLLHLPVDC 60 RGEAALAISY EAIARMQNPK YGCVAQILTL QQQVENLKQE IENFEKQMPR PACEVPEQNT 120 IDEIQFSSKY KNTSINNYMN QNSEQSYLED MSVKPFDKQT TMQHPQTMTR WEDEIILPSY 180 DTDIYDLLDG MEQNIYLQHL LMNSGSIYH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-31	3	113	7	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-31	3	113	7	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157257.1	1e-148	PREDICTED: LOB domain-containing protein 33-like
Swissprot	Q9SLB6	9e-46	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	A0A1S4BHD4	4e-60	A0A1S4BHD4_TOBAC; LOB domain-containing protein 33-like
TrEMBL	A0A1U7UT89	4e-60	A0A1U7UT89_NICSY; LOB domain-containing protein 33-like
STRING	XP_009757428.1	6e-61	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12769	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	4e-48	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]