PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001072.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 435aa    MW: 49279.2 Da    PI: 9.0008
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001072.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP118.63.1e-37128204177
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                              +Cqv+gC++dls+ k yh+rh+vC  hsk+ +++++g+eqrfCqqCsrfh l efD++krsCr+rLa hn+rrrk++
  Itr_sc001072.1_g00005.1 128 ICQVDGCKMDLSSSKYYHQRHRVCVEHSKTIKAILHGVEQRFCQQCSRFHLLAEFDDDKRSCRKRLACHNKRRRKSR 204
                              5**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114130.06126203IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.2E-30126190IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.08E-34127207IPR004333Transcription factor, SBP-box
PfamPF031104.4E-29129202IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MESWGHDLDN EGSLLFSEYG VEVNAFSDFD KNMIIAPSYG EINEGADFME LWSGNNNSNT  60
DNNNFSSKMM FSDDDMNNNW KRIPAIESVS AECCKGGYGG ILESGQSASA KKKKIITDFN  120
YPCQVPIICQ VDGCKMDLSS SKYYHQRHRV CVEHSKTIKA ILHGVEQRFC QQCSRFHLLA  180
EFDDDKRSCR KRLACHNKRR RKSRFHTHWD ASLLLDMASQ GASPFLIPEI LSGNLSFCQE  240
QENNTTRNNS PAGISILSSY DARPAGAGAG NLVEMLSSVQ ELSGGENSGG GGAFSLLSTQ  300
TCRAEHRPGI NEKSNNFMNY SRKCLKASPK RSGPRSTTID LQQLSTHLRR VEQQRSSEQR  360
WTRSKSTRWS RARRIMLDAE PRVESHAWPR PRHRARPRPR PRGRPWPRAR HQPVPWPWGQ  420
VRPDLEAEHG QSCCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-251282021084squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393403RARPRPRPRGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170520.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_019170521.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A314KRV29e-46A0A314KRV2_NICAT; Squamosa promoter-binding-like protein 6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-34SBP family protein