PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001072.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 379aa    MW: 43350.6 Da    PI: 7.5001
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001072.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP120.38.8e-38149225177
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                              +Cqv+gC++dls+ k yh+rh+vC  hska++++++g+eqrfCqqCsrfh l efD++krsCr+rLa hn+rrrk++
  Itr_sc001072.1_g00003.1 149 MCQVDGCKMDLSSSKYYHQRHRVCLDHSKATKAILHGVEQRFCQQCSRFHLLAEFDDDKRSCRKRLACHNKRRRKTR 225
                              6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114130.547147224IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.0E-31147211IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.15E-35148228IPR004333Transcription factor, SBP-box
PfamPF031105.9E-30150223IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MECWSHELDN EGSLLFTEQD VQVNAFSDFD KNMIFAPSYE EINEGADFME LWTNNNSNSN  60
SNIIDNNFIS NTILSNDNNN DNFSSIMMFS DDDMMNNNKW KRIPAIESRS EEWCNGYGGL  120
LESYGQSALA KKEKMIITGF NPCSQIPIMC QVDGCKMDLS SSKYYHQRHR VCLDHSKATK  180
AILHGVEQRF CQQCSRFHLL AEFDDDKRSC RKRLACHNKR RRKTRFHTHW DARFLLQMAS  240
QGASPFLIPE TLSGNLSFCQ EQENKTSKDR HSMLSFYDAL PAAGNLVQML SPVQQLSGGG  300
EISGGAFSIL SAAQTRADDH HRPDSKKSKN CMNYSKKRLK ASRPGRSGPI IDLQQLSTHF  360
RRVEQQRSLV QVMNQEYAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-261492231084squamosa promoter binding protein-like 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170524.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A1S4CMR26e-44A0A1S4CMR2_TOBAC; squamosa promoter-binding-like protein 6
TrEMBLA0A1U7XD136e-44A0A1U7XD13_NICSY; squamosa promoter-binding-like protein 6
STRINGXP_009788762.11e-44(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.15e-40SBP family protein