PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001072.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 345aa    MW: 39398.9 Da    PI: 8.0487
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001072.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP118.33.7e-37122198177
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                              +Cqv+gC+ dl + k+yhr+hkvC  hs a++v+v+g eqrfCqqCsrfh + efD++krsCr+rL +hnerrrk+ 
  Itr_sc001072.1_g00002.1 122 VCQVHGCNRDLRSSKHYHRKHKVCPEHSIAAQVVVNGAEQRFCQQCSRFHIIAEFDDKKRSCRKRLTQHNERRRKPM 198
                              6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-31117184IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.282120197IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-35121201IPR004333Transcription factor, SBP-box
PfamPF031104.4E-30123196IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MESSWSNGLE GGFWVSDNGL EFPVETLKRT TNNPQTERNL VPFCEGELFM VDMMWNSLVS  60
SSSADRDDND DDSAIKMLSS ESSFPSKRPR TTNHEEMNGR SRQCSPTYTQ DIVMKFSSQV  120
PVCQVHGCNR DLRSSKHYHR KHKVCPEHSI AAQVVVNGAE QRFCQQCSRF HIIAEFDDKK  180
RSCRKRLTQH NERRRKPMNQ IHWGPAARFL DMASQRLPMP FHFPAELSQT YFCHDIYGKN  240
NSCQIESTVQ QSNAHTNANQ HNQQKQASME TLSAAGRKSR RRAFSLLSAE PTRFTLHGCN  300
GGFHNGADQP EGNCQESGPV LDLQQLSALF QRVQQQQQQQ ELPSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-26117196584squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429ETLKRT
2178195KKRSCRKRLTQHNERRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170523.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A1U8EXY53e-47A0A1U8EXY5_CAPAN; squamosa promoter-binding-like protein 6 isoform X2
STRINGXP_009788762.12e-47(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.18e-36SBP family protein