PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001071.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 378aa    MW: 42083.9 Da    PI: 8.9489
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001071.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.3e-10535131
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                             +++WT eE+e l  +v+++G g Wk I r  
  Itr_sc001071.1_g00004.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDP 35
                             79*************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.734151IPR017930Myb domain
SuperFamilySSF466892.3E-10250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-10550IPR009057Homeodomain-like
PfamPF002491.5E-6532IPR001005SANT/Myb domain
CDDcd116601.09E-15676No hitNo description
SMARTSM005262.0E-11138203IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.94E-14138215IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.752140208IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.2E-11140209IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.0E-8143201IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LHSRSNIDLK SICFLGGVTG  60
HLDGEAVWLD KWRNLNVSAN AQGSRDKSRN QKPKAIADVP MTPVPNAITH ASSTPLLLET  120
ATPADAAVED NSKCLLDGKT ASKYNGMVYE ALTNLKDPSG CDIGTIVNFI EQRHEVPPNF  180
RRLLSSRLRR LVQQDKLEKI QNCFRIKKEF LHASSTTPTP KIKESGPKED LQNTGYLGDT  240
VEEAAIAAAY MIAEAENKSF VAAEAVKEAE RVSRMAEDSD VLLQLAKDIY DKWMLGGAYQ  300
RLKISEQWRM HCQVIINAPM LGGAYQRLKI NEQWRMQRQA IINAPLPNNA SAGSHLKAYP  360
HQNSTRHTCA RGEIVLLA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173473.11e-171PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A068U3Q41e-129A0A068U3Q4_COFCA; Uncharacterized protein
STRINGXP_009757029.11e-115(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-48MYB_related family protein