PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001016.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CO-like
Protein Properties Length: 417aa    MW: 47286.7 Da    PI: 6.0463
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001016.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.33.6e-091861340
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                             +r C+ + + +++++C  ++ +lC++C ++ H+       H++v
  Itr_sc001016.1_g00005.1 18 ARACDSCIRRRARWYCAADDAFLCQSCDSSVHNAnllarrHERV 61
                             578*****************************768888889877 PP
2CCT65.51.5e-22361404144
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                              Rea+++RY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Itr_sc001016.1_g00005.1 361 REARVSRYREKRRKRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 404
                              9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8791663IPR000315B-box-type zinc finger
SMARTSM003362.6E-91663IPR000315B-box-type zinc finger
PfamPF006432.7E-71861IPR000315B-box-type zinc finger
CDDcd000211.97E-101963No hitNo description
PROSITE profilePS5101716.013361403IPR010402CCT domain
PfamPF062032.7E-17361403IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MVSSSDRKLA SAVGAKTARA CDSCIRRRAR WYCAADDAFL CQSCDSSVHN ANLLARRHER  60
VRLQSSDLKT PDDFPSLESL ARSWPHGFTR KARTPRGRKH AKPKSEPEQS FTKHPFDLVP  120
EIYSDENSHN DESDEQLLYR VPVFDGFAAE MCTSGRQNEA GAENIPDVRT NIPASLDFRH  180
NKDDDGNKPP GIVPSEIELA EFAADVESLL GKGLDDESFN MEGLGLFSNF NKVKLETDEE  240
AAIANNHNVA MKFDNCDDNS PVAMCDEEYD DRGGEFATIL QQSDDFDYKT EKKKILLKLD  300
YEGVITAWAD QRSPWTNGER PDLDSNDCWP DFTDGWGTIH NPYGEMGAMS VGHATIMDEG  360
REARVSRYRE KRRKRLFSKK IRYEVRKLNA EKRPRMKGRF VKRANFVAPL SFPLITK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372387RKRLFSKKIRYEVRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9863312e-35KF986331.1 Lagerstroemia indica zinc finger protein CONSTANS-LIKE 5 (COL5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164697.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A3Q9WL221e-151A0A3Q9WL22_PETHY; Zinc finger protein CONSTANS-like 16
STRINGXP_009627333.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.18e-81B-box type zinc finger protein with CCT domain