PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001016.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 273aa MW: 29588.3 Da PI: 6.5036

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001016.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.5	6.7e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++C+l+p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++ Itr_sc001016.1_g00004.1 4 SCNGCRVLRKGCSENCTLRPCLhwiksPESQANATVFLAKFYGRAGLINLINAGPDHLRPAIFRSLLYEACGRIINPIYGSVGLMW 89 6*********************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +++++ +q+++e++l+++e Itr_sc001016.1_g00004.1 90 AGNWDRCQEAVEAVLRGSE 108 **********9988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.549	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCT LRPCLHWIKS PESQANATVF LAKFYGRAGL INLINAGPDH 60 LRPAIFRSLL YEACGRIINP IYGSVGLMWA GNWDRCQEAV EAVLRGSEIM QVNIEDGGGG 120 SGAESHPIMP FKGCDIRHLS KESSSGVHRV RSRNRFKRTG TTHDKAVDHL QSLAEFMEEE 180 EEAPAKFSIT GWGGGGGCET AESVGLERAP SHGSSSLETV EPALVNRDNP VSASIRAADR 240 GSDDELLLDL TLGFNSVERP HVSTVDKHSV GDV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB623910	7e-56	AB623910.1 Camellia sinensis DNA, SSR marker, MSE0196.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165050.1	1e-161	PREDICTED: LOB domain-containing protein 40-like
TrEMBL	A0A328D7A3	1e-118	A0A328D7A3_9ASTE; Uncharacterized protein
TrEMBL	A0A484LPI8	1e-118	A0A484LPI8_9ASTE; Uncharacterized protein
STRING	XP_009586694.1	1e-107	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-75	LOB domain-containing protein 41