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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Itr_sc001010.1_g00013.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
RAV |
| Protein Properties |
Length: 367aa MW: 40465.6 Da PI: 10.1596 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc001010.1_g00013.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 41.5 | 3.4e-13 | 60 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+ +++g
Itr_sc001010.1_g00013.1 60 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAATRFRG 108
689***9788.8*********3.....5***********************9998 PP
|
| 2 | B3 | 100.5 | 9.7e-32 | 192 | 287 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80
f+k+ tpsdv+k++rlv+pk++ae+h ++++ l +ed++g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v
Itr_sc001010.1_g00013.1 192 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqaaAAAAPKGILLNFEDKTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDVV 277
89*************************9999955566999********************************************** PP
EEEE-SSSEE CS
B3 81 vFkldgrsef 90
F++ e+
Itr_sc001010.1_g00013.1 278 SFQRAAGPEK 287
***7655444 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MDRSSADEST TSDSKSAPAK TTTAKWPAEK LCRMGSGGSV IIDAENGGVE AESSRKLPSS 60
RFKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAARAYD VAATRFRGRE AVTNFNKPLQ 120
IFAEGARNDD VQVAFLNAHS KLEIVDMLRK HTYGEELEQF KAAFGKFRNR SNRKDDNTLE 180
NPNNSSTREP LFEKAVTPSD VGKLNRLVIP KQHAEKHFPL QAAAAAAPKG ILLNFEDKTG 240
KVWRFRYSYW NSSQSYVLTK GWSRFVKEKS LKAGDVVSFQ RAAGPEKQLF IDCKTGPAGS 300
SFVQAQHKTA PAQVVRLFGV NIWKAAAGDV NGNGGEISSC GGVKRLREMD LLLGVDGGKK 360
QRVIDAL
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ170922 | 5e-42 | KJ170922.1 Diospyros kaki ethylene response factor 22 (ERF22) mRNA, complete cds. |
| Publications
? help Back to Top |
- Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Sun YW, et al.
Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
Sci Rep, 2015. 5: p. 16476
[PMID:26602265] - Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
Plant Sci., 2015. 241: p. 78-95
[PMID:26706061] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039] - Li P, et al.
The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
Physiol Plant, 2017. 159(4): p. 416-432
[PMID:27747895]
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