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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Itr_sc001001.1_g00001.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
NAC |
| Protein Properties |
Length: 163aa MW: 17828.1 Da PI: 10.1552 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc001001.1_g00001.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 84.2 | 2.7e-26 | 6 | 81 | 55 | 128 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
+ e yfF++r+ k+ +r +rat sgyWkatgkdk++ ++ + +vg+kktLvfykg+ ++g+ktdW+mhey+l
Itr_sc001001.1_g00001.1 6 DGERYFFIRREVKNGGRNRCSRATLSGYWKATGKDKKIGVSgeAQGVVGIKKTLVFYKGKPSNGSKTDWMMHEYSL 81
5589**********************************998545556***************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 163 aa
Download sequence Send
to blast |
MFGDSDGERY FFIRREVKNG GRNRCSRATL SGYWKATGKD KKIGVSGEAQ GVVGIKKTLV 60
FYKGKPSNGS KTDWMMHEYS LGGAPQPQAN WVLCRIFLKK KGGERSPSAS LVPAFRDFFA 120
AERADLNLAP ASSLSSRSSS VTESCNYQTG DHQEATSCSR AVL
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-20 | 1 | 105 | 67 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-20 | 1 | 105 | 67 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-20 | 1 | 105 | 67 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-20 | 1 | 105 | 67 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 3e-20 | 1 | 105 | 67 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 3e-20 | 1 | 105 | 67 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
