PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000999.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 497aa MW: 53961.9 Da PI: 5.1658

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000999.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.5e-39	146	206	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Itr_sc000999.1_g00003.1 146 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 206 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	128	203	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	148	204	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	150	204	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	152	188	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MREVKDSEIK LFGKKIALPE NGRVVLFDGA GEYAESCEND CVSERDRCSD DSKLNGSAGK 60 GGADVDEIDT QKPEDDDKEL LSEEFSDEKD QDQDMDELES TKNESESDNN VKTPPVDEDS 120 PSPKPSKTEN DQTETNNSQQ KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKSC 180 QRYWTAGGTM RNVPVGAGRR KNKNSASHCR HITITEALQA ARIDAPNGFH HPTYKPNGTV 240 LSFGPESPLC ESMASLLNLA DKKVPNGMRN GFYKHEQGNS PNKVGENGDD CSSVSSVTTT 300 SSVAGGKNLP QEAVMPNING FPTPVPCLPG VPWPFPWNAA VPLPAICPPG FPMPFCPAPY 360 WNCAVPGPWS LPWLAPPSPT ANQKASSSSP NSPLGKHSRE GELLTPNNLE AKESPEPKSS 420 GNSVLVPKTL RIDDPDEAAK SSIWSTLGIK YDSISRGGLF KALQPKSDEK NHTATPPSAL 480 QANPAALSRS LSFQESA

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MREVKDSEIK LFGKKIALPE NGRVVLFDGA GEYAESCEND CVSERDRCSD DSKLNGSAGK  60
GGADVDEIDT QKPEDDDKEL LSEEFSDEKD QDQDMDELES TKNESESDNN VKTPPVDEDS  120
PSPKPSKTEN DQTETNNSQQ KTLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKSC  180
QRYWTAGGTM RNVPVGAGRR KNKNSASHCR HITITEALQA ARIDAPNGFH HPTYKPNGTV  240
LSFGPESPLC ESMASLLNLA DKKVPNGMRN GFYKHEQGNS PNKVGENGDD CSSVSSVTTT  300
SSVAGGKNLP QEAVMPNING FPTPVPCLPG VPWPFPWNAA VPLPAICPPG FPMPFCPAPY  360
WNCAVPGPWS LPWLAPPSPT ANQKASSSSP NSPLGKHSRE GELLTPNNLE AKESPEPKSS  420
GNSVLVPKTL RIDDPDEAAK SSIWSTLGIK YDSISRGGLF KALQPKSDEK NHTATPPSAL  480
QANPAALSRS LSFQESA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB469355	0.0	AB469355.1 Ipomoea batatas SRF1 mRNA for Dof zinc finger protein, complete cds, cultivar: Kokei No.14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199925.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	C4B6D7	0.0	C4B6D7_IPOBA; Dof zinc finger protein
STRING	PGSC0003DMT400050273	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-91	cycling DOF factor 3