PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000994.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Whirly

Protein Properties

Length: 219aa MW: 24191.8 Da PI: 10.1027

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000994.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	195	1.1e-60	44	181	2	139
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsne 87 +yk+ka+l+v++++ptf++l+sg+lk++r+G+++l++ +a++erkydWekkq falsatev++l++l++ +sceffhdp++ +sn+ Itr_sc000994.1_g00004.1 44 IYKGKASLSVEPRLPTFSKLNSGALKVERKGSIMLTFLPAVGERKYDWEKKQMFALSATEVGTLLNLGPSDSCEFFHDPSMLQSNA 129 9*********************************************************************************** PP Whirly 88 GkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 G+vrk+l+v+ l dGsG+f++lsv n+ k+n++++vPv+ aef+v+r++++ Itr_sc000994.1_g00004.1 130 GEVRKTLSVKALGDGSGYFMSLSVVNNAHKTNDRLTVPVTGAEFSVMRTAFN 181 ***********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	6.6E-75	31	201	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	7.14E-63	37	203	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	1.3E-58	44	178	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005739	Cellular Component	mitochondrion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MLKLSKLLGT SLRGFSSQAG MPIAKKYFEA DGTLRKKVFA PYTIYKGKAS LSVEPRLPTF 60 SKLNSGALKV ERKGSIMLTF LPAVGERKYD WEKKQMFALS ATEVGTLLNL GPSDSCEFFH 120 DPSMLQSNAG EVRKTLSVKA LGDGSGYFMS LSVVNNAHKT NDRLTVPVTG AEFSVMRTAF 180 NFALPHIMGW DQYTNLQQTN TSELPTGNVA QFAKSEWER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3n1h_A	2e-88	30	195	2	168	StWhy2
3n1i_A	2e-88	30	195	2	168	protein StWhy2
3n1j_A	2e-88	30	195	2	168	Protein StWhy2
3n1k_A	2e-88	30	195	2	168	protein StWhy2
3n1l_A	2e-88	30	195	2	168	protein StWhy2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019151828.1	1e-158	PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
Swissprot	D9J034	4e-94	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	A0A328DPP0	1e-113	A0A328DPP0_9ASTE; Uncharacterized protein
STRING	XP_009772771.1	7e-95	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9782	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	9e-86	WHIRLY 2