PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Itr_sc000987.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 179aa MW: 19634.5 Da PI: 7.6421

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000987.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	25.5	1.5e-08	6	57	4	55
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 ++ +cA+a+ +g+++ +q+lL lselas +gd+++Rla++ ++ L ++l + Itr_sc000987.1_g00005.1 6 VVNHCATAIMAGNMNWVQHLLYVLSELASLTGDANHRLATHGLQVLTHHLGS 57 6789******************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	5.1E-6	6	57	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MSKDKVVNHC ATAIMAGNMN WVQHLLYVLS ELASLTGDAN HRLATHGLQV LTHHLGSGSS 60 FAGVLTFCVN HYKILQGVAD DFQRHKFVVS HPKQLRELVD PPGSSVATGP AQILEFPMKS 120 NATTVDEKEG GREGKQPPPV TSIFTVDQGS SYYKCWVQMS FIFIEKCKPD PLAVDSIKI

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4949	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13840.1	7e-15	GRAS family protein