PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Itr_sc000980.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 358aa MW: 39770.5 Da PI: 7.6856

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000980.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.1	6.4e-08	135	155	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G+Ck Gd C +aHg Itr_sc000980.1_g00016.1 135 ACPEFRK-GQCKNGDACEYAHG 155 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	4.0E-5	130	156	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.009	131	157	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.1E-6	135	155	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-4	135	157	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.343	165	189	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	11	165	188	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MMMMIRQSTH PHQTVQVPPW DFVDDPTADI HSSFPWGSNG GGNASANAVS PDSGFDALTA 60 LQRYLPSNVN DVVSDSDELD VPVDAFSCDQ FRMYEFKVRK CARGRSHDWT ECPFAHPGEK 120 ARRRDPRKFH YSGTACPEFR KGQCKNGDAC EYAHGVFECW LHPARYRTQP CKDGTQCRRR 180 VCFFAHTPDQ LRVLPQASPR SHHAAEPCDS YDGSPSRRAG FDSLFSKAAF GSYSPPLSPQ 240 SESPPMSPSA SISLNSVSGL VESMRNMQIG KGRMGISMSM SPPSWGLQIG SPRSPSTLRP 300 VFMSLPNTPT QAPTRSGPGV FDLWETSCEE EPVMERVESG RDLRARMYAR LSKENSLH

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MMMMIRQSTH PHQTVQVPPW DFVDDPTADI HSSFPWGSNG GGNASANAVS PDSGFDALTA  60
LQRYLPSNVN DVVSDSDELD VPVDAFSCDQ FRMYEFKVRK CARGRSHDWT ECPFAHPGEK  120
ARRRDPRKFH YSGTACPEFR KGQCKNGDAC EYAHGVFECW LHPARYRTQP CKDGTQCRRR  180
VCFFAHTPDQ LRVLPQASPR SHHAAEPCDS YDGSPSRRAG FDSLFSKAAF GSYSPPLSPQ  240
SESPPMSPSA SISLNSVSGL VESMRNMQIG KGRMGISMSM SPPSWGLQIG SPRSPSTLRP  300
VFMSLPNTPT QAPTRSGPGV FDLWETSCEE EPVMERVESG RDLRARMYAR LSKENSLH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019184932.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	1e-111	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A328E4L6	0.0	A0A328E4L6_9ASTE; Uncharacterized protein
STRING	XP_009784195.1	1e-176	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-111	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]