PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000974.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 335aa    MW: 37968.1 Da    PI: 4.8004
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000974.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.1e-1996149356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k++++++eq++ Le+ Fe ++++  e++ +LAk lgL+ rqV vWFqNrRa++k
  Itr_sc000974.1_g00003.1  96 KKRRLSPEQVHFLEQSFEVENKLEPERKVQLAKDLGLQPRQVAVWFQNRRARYK 149
                              56689************************************************9 PP
2HD-ZIP_I/II133.11e-4295186192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrls eqv++LE+sFe e+kLeperKv+la++LglqprqvavWFqnrRAR+ktk++Ek+y++Lk++yd+lk++ ++L+ke+e+
  Itr_sc000974.1_g00003.1  95 EKKRRLSPEQVHFLEQSFEVENKLEPERKVQLAKDLGLQPRQVAVWFQNRRARYKTKHIEKEYDSLKSCYDQLKADCDSLSKENEQ 180
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              Lr+e++
  Itr_sc000974.1_g00003.1 181 LRNEVQ 186
                              **9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-1888151IPR009057Homeodomain-like
PROSITE profilePS5007117.11991151IPR001356Homeobox domain
SMARTSM003893.4E-1994155IPR001356Homeobox domain
PfamPF000463.7E-1696149IPR001356Homeobox domain
CDDcd000862.36E-1696152No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1997158IPR009057Homeodomain-like
PRINTSPR000311.1E-5122131IPR000047Helix-turn-helix motif
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5131147IPR000047Helix-turn-helix motif
PfamPF021839.9E-16151192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEGTGKMMSS CVDNRVLLQN DRFPSPSEVL DSFWLPTSNP SFQGNFLAYP SRDLPFFSAF  60
KLQGSASMVN FNGGGEMERG GGNEDYGGGG YYPAEKKRRL SPEQVHFLEQ SFEVENKLEP  120
ERKVQLAKDL GLQPRQVAVW FQNRRARYKT KHIEKEYDSL KSCYDQLKAD CDSLSKENEQ  180
LRNEVQLLTE KLMRKEKGCS IPQPAKPQSS LDPTPNRNLG KPQQQHLNSQ DNVCKQEDAS  240
SAKSDVFDSD SPRYTDGIHS SLFFQEPANS STVLDSDFSQ DDDDSLNRGL IHSPSVFPKL  300
EEEDKDHCLQ MLPPYSCGLG FNVEDQTAPS WFWSY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170883.11e-169PREDICTED: homeobox-leucine zipper protein HAT5-like
SwissprotQ022834e-44HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A484N1P61e-95A0A484N1P6_9ASTE; Uncharacterized protein
STRINGXP_009801495.16e-83(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-46homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]