PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 271aa MW: 29917.9 Da PI: 8.3197

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000960.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	126	180	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA++l+L rqV vWFqNrRa+ k Itr_sc000960.1_g00003.1 126 RKKLRLTKAQSALLEESFKQHSTLNPKQKQDLARELSLRPRQVEVWFQNRRARTK 180 678899***********************************************98 PP
2	HD-ZIP_I/II	123.9	7.7e-40	126	215	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rl+k q++lLEesF+++++L+p++K++lareL l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+e Itr_sc000960.1_g00003.1 126 RKKLRLTKAQSALLEESFKQHSTLNPKQKQDLARELSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEVQE 211 69************************************************************************************ PP HD-ZIP_I/II 87 Lreel 91 L+ +l Itr_sc000960.1_g00003.1 212 LK-AL 215 *9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.01E-18	116	183	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	122	182	IPR001356	Homeobox domain
SMART	SM00389	3.0E-15	124	186	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-16	126	180	IPR001356	Homeobox domain
CDD	cd00086	5.88E-16	126	183	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.7E-17	126	180	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	157	180	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.1E-10	182	216	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	4.4E-26	182	225	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGFDDVCSTG LVLGLGFSCS DQASKVDKPA RKPAAAMSFE PSLTLSLSGE TFDRQAAAVK 60 KVAAAAVVAN KVCVDHQSAD LYRQDSAASS YSNASVKRER ESEEAEMERV SSRVISDEDD 120 DGGNGRKKLR LTKAQSALLE ESFKQHSTLN PKQKQDLARE LSLRPRQVEV WFQNRRARTK 180 LKQTEVDCEF LKKCCETLTD ENRRLQKEVQ ELKALKLAQP FYMQLPAATL TMCPSCERIG 240 GAAVEASNKS PFTMAPKPHF FNPFTNPSAA C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	182	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019173159.1	1e-160	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	8e-98	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A4D8YV98	1e-140	A0A4D8YV98_SALSN; Homeobox-leucine zipper protein
STRING	VIT_00s0732g00010.t01	1e-133	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-91	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]