PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000957.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 326aa MW: 35941 Da PI: 8.0108

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000957.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.2e-32	76	129	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ Itr_sc000957.1_g00010.1 76 PRLRWTPDLHLCFVQAVQRLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 129 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-30	72	130	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.42	72	132	IPR017930	Myb domain
SuperFamily	SSF46689	6.09E-15	74	130	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-24	76	131	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-9	77	128	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MAESVVDLNM IPVDDGEEEG IIIDPKTSSS SNNHSLDDQE DEITTTSNDG NGSSNTAAGS 60 GGTGGGVRQY VRSKVPRLRW TPDLHLCFVQ AVQRLGGQER ATPKLVLQLM NVKGLSIAHV 120 KSHLQMYRSK KVDDHGQVIN ERAGYHTGNA NNLLQNLWQL PMFDRRIRSN FRYMNNSWSS 180 SNANWMSARN DSIINGGFGM NKNTIFTGPE CKRGHEALRE ANNNGKPTQL QPGEESLIMP 240 SFINGVSNSP DIKWTSFSPA NAMKRNGAGG EKGVDLNLTL SMNLKREREQ DEGNIRHCKR 300 RCLDGGEEVD SSLSLSLSSS RSKFAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	77	131	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178252.1	1e-165	PREDICTED: putative two-component response regulator ARR19
STRING	VIT_06s0004g07000.t01	2e-54	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-39	G2-like family protein