PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000950.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YB

Protein Properties

Length: 847aa MW: 94609.5 Da PI: 9.4616

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000950.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	73	4.8e-23	1	70	17	86
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 m++++P a+i+++aketvq+ v+efi +vt++a++++++e+rkt++++dl+wa+ lG+ yv +++++ Itr_sc000950.1_g00003.1 1 MREAIPRSARIAEEAKETVQKWVTEFIHYVTAKANERAKQERRKTVTTEDLIWAMRALGLGSYVLEFDTW 70 899************************************************************9887766 PP
2	NF-YB	68.5	1.2e-21	726	788	29	91
NF-YB 29 kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +aketvq+cv+efi vt++a++++++e+rkt++++dl+wa+ lG+ y+++l+++++ y Itr_sc000950.1_g00003.1 726 SEAKETVQKCVTEFIHRVTAKANERAKQERRKTVTTEDLIWAMRALGLGSYAQELTAFIMDYC 788 68**********************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.14E-18	1	65	IPR009072	Histone-fold
Pfam	PF00808	2.3E-15	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.0E-23	1	66	IPR009072	Histone-fold
Pfam	PF14244	8.1E-13	157	203	IPR029472	Gag-polypeptide of LTR copia-type
PROSITE profile	PS50994	11.923	253	381	IPR001584	Integrase, catalytic core
SuperFamily	SSF53098	1.18E-28	253	390	IPR012337	Ribonuclease H-like domain
Gene3D	G3DSA:3.30.420.10	1.4E-16	253	374	IPR012337	Ribonuclease H-like domain
Pfam	PF00665	1.6E-10	253	332	IPR001584	Integrase, catalytic core
SuperFamily	SSF47113	2.33E-17	723	787	IPR009072	Histone-fold
Pfam	PF00808	2.0E-13	726	768	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	7.5E-21	726	788	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence Send to blast
MREAIPRSAR IAEEAKETVQ KWVTEFIHYV TAKANERAKQ ERRKTVTTED LIWAMRALGL 60 GSYVLEFDTW QQEQLYLAFS LGAFSSPSMA AWPPISSRST PMDNSTGNPA GTGNPILGNA 120 RNQAGSGNPI TGSATSEPAA TEVTFNSQTH SNPYFLHINE SPALELVSFP LVGSNYHPWA 180 RAMSMSLSCK NKLVFVNGTI TKPSTDDLER YLAWERCNNM VVSWVVRTLS PSIGSTVLWI 240 DTAYGVWEDL KRSRAVWVYL MRTKSEVRSL IIQFCNLVKN QFGTTVKCIR SDNGLEFNLQ 300 DYFSQKGIIH QTSCTYTPQQ NSRVERKHGH LLSTARSLRF QANLPEQFWG ECVLHAAYII 360 NRLPSAAIDN HIPYQILIKR SPQYGHLRVF GCLAYASTVG PKSKLDARSK KCIFLGYTNG 420 TKGYKVYDLI TKELFVSRDV TFYEHVFPLQ QGNSSAVGNP QLIFPTMNND LLEVPKSPQF 480 QNQDNNRGEH TPLRNSSFEQ SRELHSPNQA SSSDEACPSL SEVPEQSGVI SSNSPLPLVT 540 RKSTRQKHPP NYLQDYVCQS TTRSMKTVSV LPLPSLFFLL LLRNTTPRNL LHAFITDYRA 600 THVHGRAASH PCRRCHRRQS SRYRLCRAFR FRGLLPNRCT TAPVVPPPPL PPPSAVTIFL 660 IPHTLPPTLT VEIPFPSMHA CNNVCRAILL VPLYIFISPS SSPNYTWEAK MNADDNAAAD 720 GPHWRSEAKE TVQKCVTEFI HRVTAKANER AKQERRKTVT TEDLIWAMRA LGLGSYAQEL 780 TAFIMDYCAK HVHGRAATHP LPPRAAARPA GTVYAGFSSA GGSASSSSPF GGDYFLDPSY 840 PPTNFDG

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence Send to blast

MREAIPRSAR IAEEAKETVQ KWVTEFIHYV TAKANERAKQ ERRKTVTTED LIWAMRALGL  60
GSYVLEFDTW QQEQLYLAFS LGAFSSPSMA AWPPISSRST PMDNSTGNPA GTGNPILGNA  120
RNQAGSGNPI TGSATSEPAA TEVTFNSQTH SNPYFLHINE SPALELVSFP LVGSNYHPWA  180
RAMSMSLSCK NKLVFVNGTI TKPSTDDLER YLAWERCNNM VVSWVVRTLS PSIGSTVLWI  240
DTAYGVWEDL KRSRAVWVYL MRTKSEVRSL IIQFCNLVKN QFGTTVKCIR SDNGLEFNLQ  300
DYFSQKGIIH QTSCTYTPQQ NSRVERKHGH LLSTARSLRF QANLPEQFWG ECVLHAAYII  360
NRLPSAAIDN HIPYQILIKR SPQYGHLRVF GCLAYASTVG PKSKLDARSK KCIFLGYTNG  420
TKGYKVYDLI TKELFVSRDV TFYEHVFPLQ QGNSSAVGNP QLIFPTMNND LLEVPKSPQF  480
QNQDNNRGEH TPLRNSSFEQ SRELHSPNQA SSSDEACPSL SEVPEQSGVI SSNSPLPLVT  540
RKSTRQKHPP NYLQDYVCQS TTRSMKTVSV LPLPSLFFLL LLRNTTPRNL LHAFITDYRA  600
THVHGRAASH PCRRCHRRQS SRYRLCRAFR FRGLLPNRCT TAPVVPPPPL PPPSAVTIFL  660
IPHTLPPTLT VEIPFPSMHA CNNVCRAILL VPLYIFISPS SSPNYTWEAK MNADDNAAAD  720
GPHWRSEAKE TVQKCVTEFI HRVTAKANER AKQERRKTVT TEDLIWAMRA LGLGSYAQEL  780
TAFIMDYCAK HVHGRAATHP LPPRAAARPA GTVYAGFSSA GGSASSSSPF GGDYFLDPSY  840
PPTNFDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	1e-16	1	73	19	91	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-16	1	73	19	91	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2	3	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	2e-18	NF-YB family protein