 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Itr_sc000950.1_g00002.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
| Family |
NF-YB |
| Protein Properties |
Length: 170aa MW: 18243.5 Da PI: 8.5018 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000950.1_g00002.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 105.6 | 3.2e-33 | 27 | 116 | 5 | 94 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
++ +P++ v +im++++P a+i+++aketvq+cv+efi +vt++a++++++e+rkt++++dl+wa+ lG+ y+e+l+ +++ y
Itr_sc000950.1_g00002.1 27 QNDIPLSTVLKIMREAIPRSARIAEEAKETVQKCVTEFIHYVTAKANERAKQERRKTVTTEDLIWAMRALGLGSYAEELTDFITDY 112
5679********************************************************************************** PP
NF-YB 91 rele 94
r ++
Itr_sc000950.1_g00002.1 113 RATH 116
*875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 170 aa
Download sequence Send
to blast |
MHAGENNANM NADNAAAAGP QRRRTAQNDI PLSTVLKIMR EAIPRSARIA EEAKETVQKC 60
VTEFIHYVTA KANERAKQER RKTVTTEDLI WAMRALGLGS YAEELTDFIT DYRATHVHGR 120
AASHPLPPPP VQQVPFNQGF PVPGFAAGPM NDGAGGSASS FSSPSFGGGV
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5g49_A | 6e-26 | 30 | 113 | 13 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
