PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000942.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 681aa    MW: 75730.1 Da    PI: 5.1053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000942.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.8e-14493535754
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ErrRR++iN++f  L +l+P++     +K++K++iL +++eY+k+L
  Itr_sc000942.1_g00007.1 493 VSERRRREKINERFMILSSLIPSS-----GKVDKVSILDETIEYLKNL 535
                              57*********************9.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.8E-4383251IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.463486535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-16490551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-16490549IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-16492541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-11494535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-8501539No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MPKVVFQFRK PKDWIFIAFG DFSDFSPLKC TFQSSVHYGS ICLFKKNPIF VYIEVCPVCS  60
RVRSQMLKLS LRMAKGEGFA ENLREKLALA IRSIEWSYAI FWTISSAQPG VLEWGDGYYN  120
GDIKTRKTVQ AAETSTDQLG LQRTEHLREL YGSLLAGETN LHAKIPSAAL SPEDLTDTEW  180
YFLVCMSFVF NIGQGLPGKA LAKNQTVWLC NAPQADGRTV VCFPHLGGVI ELGVTELVKE  240
DLGLIQHLKT SYLDIPCPIV PGVPNYISTD DGNDRDIVNS KPNQDTLEAS PKEENIDSPD  300
DSSNGLEADE QGGDEFKLNG ATAEASQPRN CQIVEDDISN CIHNSTNSSD CISQNYENPE  360
KVSDFLNDEE MVNHSPPENQ ECNQESLAPL DNRGQGHDVH YQSILSSVLK SSHQFILGPY  420
FRNGNRESSF VGWKKEISSN TQTLRIETSQ RLLKKVLSGV ARMVCIPDAR KEGDGKNDPC  480
KLEADESDRS RVVSERRRRE KINERFMILS SLIPSSGKVD KVSILDETIE YLKNLKTRVW  540
EAESQKEGFE LNARMGRNCK DCDDAERTSD NCGTNIIDNN KKPSSKKRKA SETEGASRST  600
AKNGSAREVA VSVTDEDVTI EIGCQWSEGV LIKIIQALNN LHLDCETIQS SNGDDGTLSM  660
KASKLTSPSP ALIRQALKRV I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-17812527192Transcription factor MYC3
4rqw_B8e-17812527192Transcription factor MYC3
4rs9_A8e-17812527192Transcription factor MYC3
4yz6_A8e-17812527192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1494499ERRRRE
2495500RRRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3378620.0JQ337862.1 Ipomoea batatas bHLH1 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171149.10.0PREDICTED: transcription factor EGL1-like isoform X1
RefseqXP_019171150.10.0PREDICTED: transcription factor EGL1-like isoform X1
RefseqXP_019171151.10.0PREDICTED: transcription factor EGL1-like isoform X1
RefseqXP_019171152.10.0PREDICTED: transcription factor EGL1-like isoform X1
TrEMBLW8CHZ70.0W8CHZ7_IPOBA; BHLH1 transcription factor
STRINGXP_009600065.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-145bHLH family protein