PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ERF

Protein Properties

Length: 251aa MW: 27011.9 Da PI: 4.8811

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000940.1_g00023.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.5	1.4e-17	47	96	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Itr_sc000940.1_g00023.1 47 SYVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAALSIKG 96 79**998.******854...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.54E-29	46	104	No hit	No description
Pfam	PF00847	7.5E-12	46	96	IPR001471	AP2/ERF domain
SMART	SM00380	6.8E-34	47	110	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.1E-30	47	105	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.997	47	104	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.71E-20	47	104	IPR016177	DNA-binding domain
PRINTS	PR00367	1.0E-8	48	59	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-8	70	86	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MAEPPFCNET ELSTSNSSCS PSSRCKRPRD DAGGGKSCKR SDLKHPSYVG VRMRAWGKWV 60 SEIREPKKKS RIWLGTFATP EMAARAHDVA ALSIKGDSAL LNFPSLAGLL PRPATSTPRD 120 VQAAAVKAAH MAHLDPPPKP PSSSAASLAS SPSSSSLVST VTSGEDASTP PQEDDENDAA 180 PPSPAELGEI VELPELRDNA EPTRDEFIFV DSYGWDFCHP WSHLDDGRYV AGDGFDAVLS 240 GDFDSCLWQH Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-16	44	104	11	72	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Putative transcriptional activator.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by cold stress. {ECO:0000269\|PubMed:11798174}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019200257.1	1e-123	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q39127	1e-46	TINY_ARATH; Ethylene-responsive transcription factor TINY
Swissprot	Q9LYD3	2e-46	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A484MFR0	5e-90	A0A484MFR0_9ASTE; Uncharacterized protein
STRING	XP_009782186.1	1e-65	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25810.1	2e-40	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]