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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000922.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WRKY | ||||||||
Protein Properties | Length: 391aa MW: 43141.9 Da PI: 6.5095 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.3e-30 | 186 | 244 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt a+C vkk+ver ed ++v++tYeg+H+h+ Itr_sc000922.1_g00013.1 186 LDDGYRWRKYGQKAVKNTHFPRSYYRCTAASCGVKKRVERWCEDASIVVTTYEGTHTHP 244 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-31 | 171 | 246 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-27 | 178 | 246 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.023 | 181 | 246 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-33 | 186 | 245 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 187 | 244 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MENKFDDLII KRDSMGIPVF SDEIPSTSPA ALQQALLGEA DKTTYSLGFL DAQHNNNNYY 60 YNTIFDLIIH THTHTPPPQH QSIPPPPSHS NSPSPLASTS LLESSEVVNA TPPTPNSSSL 120 SSSSNEATPA ANDDQHQTSK TVEEDEEEEE DKTTKKQVKP KNKKNAKKRQ REARFAFMTK 180 SEVDQLDDGY RWRKYGQKAV KNTHFPRSYY RCTAASCGVK KRVERWCEDA SIVVTTYEGT 240 HTHPCPIKHT AGSLGIGIMP PNTSSFFPTT TTAAAAQEGG ITSSSSSSSY CFEELDNNNV 300 ILIPSRPSSQ QLHYPLQHTS TYFQTPTYIS NGAAALLWGR TDSISTTTNL LPALPQGLPP 360 SLIPDHGLLQ DMVPFQMVKQ EERSSPAKKD I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-23 | 179 | 246 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-23 | 179 | 246 | 10 | 77 | Probable WRKY transcription factor 4 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019174085.1 | 1e-139 | PREDICTED: probable WRKY transcription factor 48 | ||||
TrEMBL | M1ATF4 | 2e-58 | M1ATF4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400029812 | 4e-59 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 1e-37 | WRKY DNA-binding protein 48 |